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Table 4 Autocorrelation for derived allele frequency and the frequency of adjacent derived polymorphism for B. taurus and simulated populations

From: An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle

Chromosome Angus Holstein Simulated 1 Simulated 2
1 0.054 0.004 0.301 0.17
2 0.141 0.16 -0.009 0.075
3 0.011 0.028 0.146 -0.146
4 -0.014 0.007 -0.069 -0.123
5 0.113 0.142 -0.003 0.007
6 0.073 0.036 -0.109 0.002
7 0.125 0.082 0.293 0.178
8 0.145 0.093 -0.063 0.055
9 -0.013 -0.005 0.086 -0.042
10 0.031 0.055 -0.211 -0.012
11 0.063 0.095 0.002 0.066
12 0.098 0.16 0.014 0.087
13 0.196 0.244 0.069 0.143
14 0.068 0.155 -0.081 -0.057
15 0.047 0.043 0.089 0.102
16 -0.017 0.024 -0.073 -0.023
17 -0.042 -0.083 0.002 0.014
18 0.055 0.077 -0.072 -0.271
19 0.007 -0.048 -0.046 -0.136
20 0.034 0.034 0.063 0.015
21 -0.037 -0.023 0.078 -0.132
22 0.029 0.026 -0.141 0.042
23 0.11 -0.035 -0.021 -0.161
24 -0.07 0.017 -0.055 -0.024
25 0.127 0.211 0.109 -0.12
26 0.082 0.252 -0.042 0.104
27 0.017 0.134 -0.155 0.049
28 -0.035 -0.1 0.035 -0.117
29 0.175 0.096 0.149 0.02
X 0.056 0.085 - -
Average (s.e) 0.054 (0.012) 0.066 (0.016) 0.01 (0.022) -0.008 (0.02)
Pvalue p < 0.001 p < 0.001 p > 0.05 p > 0.05
  1. *X chromosome not modelled in simulated populations