Table 3 H. bacteriophora distinct ESTs similar to C. elegans genes involved in RNA interference
From: Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1
H. bacteriophora distinct EST | C. elegans homolog | Putative function | E value | Similaritya |
|---|---|---|---|---|
FF679415 | WBGene00009163 (drsh-1) | Predicted RNase III-type ribonuclease that is orthologous to Drosophila and human Drosha | 5e-12 | 555/628, 43% |
ES739421 | WBGene00001585 (gfl-1) | Ortholog of human GAS41. | 1e-73 | 591/599, 77% |
ES741260 | WBGene00004326 (rde-4) | dsRNA binding protein (dsRBP) | 7e-08 | 369/505, 50% |
EX913423 | WBGene00004880 (smg-2) | RNA helicase nonsense mRNA reducing factor | 2e-47 | 509/576, 66% |
Contig658 | WBGene00004883 (smg-5) | Component of nonsense-mediated mRNA decay (NMD) pathway | 5e-22 | 498/672, 61% |
EX014403 | WBGene00006626 (TSN-1) | Component of the RNA-induced silencing complex (RISC) | 2e-64 | 651/652, 71% |
Contig211 | WBGene00006924 (vig-1) | Predicted RNA-binding protein orthologous to Drosophila VIG (Vasa Intronic Gene) | 2e-26 | 594/1573, 45% |
EX915778 | WBGene00006975 (zfp-1) | A leucine zipper, zinc finger, and PHD/LAP domain-containing protein | 1e-10 | 144/567, 83% |
EX912737 | WBGene00006975 (zfp-1) | A leucine zipper, zinc finger, and PHD/LAP domain-containing protein | 5e-09 | 594/607, 38% |