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Table 2 Analysis of PASA gene models: RT-PCR testing of 13 novel, single exon PASA gene assemblies

From: Improving Gene-finding in Chlamydomonas reinhardtii:GreenGenie2

Assembly ID

Outcome

3146_3724

Present in cDNA

5172_6168

Present in cDNA

8132_9749

Present in cDNA

9104_10933

Present in cDNA

9866_11843

Present in cDNA

11161_13363

Present in cDNA

11240_13451

Present in cDNA

11709_14017

Present in cDNA

14828_17825

Present in cDNA

16095_19351

Present in cDNA

14105_16951

Not present in cDNA

15620_18773

Not present in cDNA

14205_17074

Not present in cDNA

  1. Present: A product of the correct size was found in samples by RT-PCR
  2. Not present: No product was obtained by RT-PCR
  3. Assembly ID numbers can be downloaded from http://bifrost.wustl.edu/cgi-bin/greengenie2/greenGenie2. For primers used see Additional file 3