Table 3 Comparing GreenGenie2 and GeneMark.hmm-ES 3.0 in gb140 catalog
From: Improving Gene-finding in Chlamydomonas reinhardtii:GreenGenie2
| Â | Â | GreenGenie2 | GeneMark.hmm-ES 3.0 | ||
|---|---|---|---|---|---|
| Â | Â | Sensitivity | Specificity | Sensitivity | Specificity |
Gene Level | (n = 140) | 0.51 | 0.47 | 0.31 | 0.24 |
Exon Level | (n = 1145) | 0.83 | 0.83 | 0.79 | 0.74 |
Initial Exons | (n = 133) | 0.65 | 0.60 | 0.50 | 0.40 |
Internal Exons | (n = 870) | 0.87 | 0.88 | 0.84 | 0.84 |
Terminal Exons | (n = 133) | 0.82 | 0.75 | 0.78 | 0.63 |
Single Exon | (n = 7) | 0.71 | 0.62 | 0.00 | 0.00 |
Nucleotide Level | (n = 713682) | 0.93 | 0.92 | 0.91 | 0.89 |