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Table 3 Summary, characterization of serpin inferred amino acid sequences

From: Ixodes scapularis tick ser ine p roteinase in hibitor (serpin) gene family; annotation and transcriptional analysis

Serpin # ID

Signal peptide

Putative Function

Trace archive EST/mate Accession #s

Whole genome shotgun accession #s

Best match (% identity)

1

+

Inhibitory

1731419061/1731424162

ABJB010004033

IriS-4, DQ915844 (56)

2

+

Inhibitory

1446657576/1446661330

ABJB010418850 and ABJB011135496

IriS-4, DQ915844 51)

3

+

Inhibitory

1446665747/1446661466

ABJB010065261

IriS-4, DQ915844 (56)

4

+

Inhibitory

1446883315/1446875792

ABJB011011198

IriS-4, DQ915844 (57)

5

+

Inhibitory

1446915260/1446919205

ABJB010283366

IscAAM93649 (97)REF1

6

+

Inhibitory

1446658181/1446658460

ABJB011103238

IscAAV80788 (73)

7

+

Inhibitory

1446654646/1446653845

ABJB011103238 and ABJB010459188

IscAAV80788 (97) REF1

8

+

Inhibitory

NEF

ABJB010459188

IscAAV80788 (73)

9

+

Inhibitory

1798691964/1798683282

ABJB010543279

IscAAV80788 (73)

10

P

Inhibitory

NEF

ABJB010543279

Iri-1 DQ915842 (95)

11

+

Inhibitory

NEF

ABJB010543279

Lospin17 REF2(46)

12

+

Inhibitory

1798658594/no mate

ABJB010080534

Lospin17 REF2(29)

13

+

Non-Inhibitory

1798680529/1798669906

ABJB010568406

HloS-2, AB162827 (50)

14

+

Inhibitory

1446647997/1446656254

ABJB010572532

Lospin17 REF2(38)

15

+

Inhibitory

NEF

ABJB010589966

Lospin17 REF2(48)

16

+

Inhibitory

NEF

ABJB010189666

Lospin17 REF2(44)

17

+

Inhibitory

1446918763/1446915174

ABJB010803180

IriS-1 DQ915842 (30)

18

+

Inhibitory

1446686436/1446684945

ABJB010296835

IriS-8 DQ915845 (98)

19

+

Inhibitory

1446935509/1446936853

ABJB010938637 and ABJB010859665

HloS-2, AB162827 (50)

20

+

Inhibitory

1446937497/1446940930

ABJB010863599

Lospin10 REF2(34)

21

-

Inhibitory

799333999/1799375613

ABJB011069597 and ABJB010801481

Lospin17 REF2(52)

22

+

Inhibitory

1798749904/1798771804

ABJB010325534 and ABJB010620410

HloS-2, AB162827 (51)

23

+

Inhibitory

1702098781/1702102057

ABJB010111671 and ABJB010862034

HloS-2, AB162827 (50)

24

+

Inhibitory

NEF

ABJB010229324

Lospin4 REF2(46)

25

+

NR

NEF

ABJB010327382

Lospin17 REF2(41)

26

+

Inhibitory

1702098781/1702098781

ABJB011108013

HloS-2, AB162827 (44)

27

+

Inhibitory

1446877265/1446875646

ABJB010216105

HloS-2, AB162827 (48)

28

+

NR

NEF

ABJB011030283

Lospin4 REF2(34

29

+

Inhibitory

1702098781/1702102057

ABJB010216676

Lospin17 REF2(49)

30

-

Inhibitory

1798755892/1798766236

ABJB011013454

Lospin12 REF2(43)

31

P

Inhibitory

NEF

ABJB010583840

Lospin17 REF2(47)

32

-

Inhibitory

1799314980/1799282524

ABJB010837586

Lospin7 REF2(61)

33

P

Inhibitory

1446912351/1446909212

ABJB010588517

Lospin17 REF2(44)

34

+

Inhibitory

NEF

ABJB010122781

Iris REF2(93)

35

-

Non-inhibitory

1701896038/1701906143

ABJB010889434

IriS-2, DQ915843 (46)

36

+

Inhibitory

1446674847/1446673722

ABJB010262605

Iris REF3(93)

37

-

Inhibitory

1446912351/1446909212

ABJB010112590

IriS-2, DQ915843 (60)

38

-

Inhibitory

1446875683/1446883661

ABJB011132035

Iris REF3(60)

39

P

Inhibitory

1799178683/1799156584

ABJB010146202

Iris REF3(55)

40

P

Inhibitory

NEF

ABJB011073580

Lospin17 REF2(39)

41

+

Inhibitory

1799307827/1799285191

ABJB010040374

IriS-2, DQ915843 (93)

42

+

Inhibitory

1798653329/1798670720

ABJB010592280

IscAAV80788 (66)

43

P

Inhibitory

NEF

ABJB010519540

IriS-1 DQ915842 (61)

44

P

Inhibitory

1701931459/1701895980

ABJB010496686

RapS-3 REF4(44)

45

P

Inhibitory

NEF

ABJB010314107

Lospin7 REF2(41)

  1. REF1[35], REF2[33], REF3[34], REF4 [17], NR, denotes partial in the carboxy-terminal region and no reactive center loop found, thus functionality not determined. Plus sign (+) denotes signal peptide is present, P = partial at the amino terminus region and presence of SP not determined. NEF denotes, not EST found. 2Because of space these two (ABJB0109755250 and ABJB010321224) additional accession numbers not listed in table above