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Table 2 SVM and cuPSSM results for short fragments.

From: A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment

Length

Classifier

Sensitivity*

Specificity*

Accuracy*

300 bp

SVM (tetra)

97.33 ± 1.2

96.55 ± 3

97.5 ± 1.2

 

cuPSSM

98.42 ± 0.64

98.39 ± 1.7

98.44 ± 0.7

200 bp

SVM(tetra)

93.51 ± 1.7

90.31 ± 5.7

94.17 ± 1.7

 

cuPSSM

98.34 ± 1.7

98.37 ± 1.7

97.32 ± 1

100 bp

SVM(tetra)

85.21 ± 2.6

80.03 ± 7.4

86.29 ± 2.8

 

cuPSSM

91.92 ± 1.87

95.27 ± 3.7

91.22 ± 2.1

  1. * The analysis of randomly chosen fragments for sequences of lengths 300, 200 and 100 bp was repeated 30, 50 and 100 times, respectively.
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BMC Genomics

ISSN: 1471-2164

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