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Figure 2 | BMC Genomics

Figure 2

From: Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes

Figure 2

Evaluation of the genome-wide prediction of CRP regulons in 12 cyanobacterial genomes. The green curves represent the probability p ( S I U > s ) MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemiCaaNaeiikaGIaem4uam1aaSbaaSqaaiabdMeajnaaBaaameaacqWGvbqvaeqaaaWcbeaakiabg6da+iabdohaZjabcMcaPaaa@3552@ and the blue ones represent p ( S C U > s ) MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemiCaaNaeiikaGIaem4uam1aaSbaaSqaaiabdoeadnaaBaaameaacqWGvbqvaeqaaaWcbeaakiabg6da+iabdohaZjabcMcaPaaa@3546@ . The red curves are the log-odd ratio (LOR), defined as L O R ( s ) = ln ( p ( S I U > s ) / p ( S C U > s ) ) MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemitaWKaem4ta8KaemOuaiLaeiikaGIaem4CamNaeiykaKIaeyypa0JagiiBaWMaeiOBa4MaeiikaGIaemiCaaNaeiikaGIaem4uam1aaSbaaSqaaiabdMeajnaaBaaameaacqWGvbqvaeqaaaWcbeaakiabg6da+iabdohaZjabcMcaPiabc+caViabdchaWjabcIcaOiabdofatnaaBaaaleaacqWGdbWqdaWgaaadbaGaemyvaufabeaaaSqabaGccqGH+aGpcqWGZbWCcqGGPaqkcqGGPaqkaaa@4BBD@ (see Methods).

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