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Table 1 Transcriptional units in PCC6803 used for the initial phylogenetic footprinting analysis.

From: Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes

ORF(s) within TU

Putative CRP binding site1

Position2

slr1667 slr1668 ssr2786

TGTGA TCTGGGTCACA

-245

slr2015 slr2016 slr2017 slr2018

GGTGT TTATTGTCACA

-346

sll0443 sll0444 sll0445 sll0446 sll0447 sll0448 sll0449

GGTGA TTAAGTTCCCA

-371

slr0442

TGTGA TCCAGATCACA

-189

sll1371 sll1372 sll1373

AGTGA AAAAACTCACT

-143

  1. 1. Bold, the highly conserved positions within the palindromic CRP binding sites.
  2. 2. Position of the putative CRP binding site relative to the first codon in the TU.
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BMC Genomics

ISSN: 1471-2164

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