Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes

BMC Genomics

Table 2 Summary of the genome-wide CRP binding site predictions.

Genome	No. of TU	% genes shared with E. coli K12¹	Score at p < 0.05	LOR at p < 0.05	No. of sites predicted at p < 0.05	Score at p < 0.01	LOR at p < 0.01	No. of sites predicted at p < 0.01
MBIC11017	3406	16.18	6.42	0.96	445	6.85	1.60	174
ATCC29413	3278	19.98	6.95	1.14	521	7.41	1.85	211
A-prime	1429	29.08	6.03	0.32	100	6.4	0.98	41
B-prime	1495	29.20	6.1	0.37	109	6.51	1.08	44
PCC7120	3300	18.56	6.89	1.17	537	7.34	2.01	249
MIT9313	1340	32.19	6.47	0.63	124	6.83	1.55	63
MIT9303	1786	24.62	6.34	0.69	186	6.81	1.10	55
CC9311	1656	26.89	6.22	0.43	130	6.65	0.66	34
CC9605	1391	28.42	5.93	0.67	237	6.37	1.31	90
PCC6803	1622	27.14	6.34	0.76	181	6.82	1.19	59
IMS101	3253	19.34	7.13	1.01	451	7.68	1.40	132
BP-1	1075	31.41	6.16	0.62	101	6.68	0.93	29

1. Calculated as the number of genes that have an orthologue in the E. coli K12 genome normalized to the total number of genes in that genome.

ISSN: 1471-2164