From: Gene organization and sequence analyses of transfer RNA genes in Trypanosomatid parasites
Amino acid | Codon | tDNA anticodon | L. major gene copy number | T. brucei gene copy number | T. cruzi gene copy number | Anticodon2 | L. major Codon usage % | T. brucei Codon usage % | T. cruzi Codon usage % |
---|---|---|---|---|---|---|---|---|---|
Ala | GCT | AGC | 2 | 2 | 2 (98%) 1 | IGC | 1.83 | 2.08 | 1.61 |
GCC | GGC | 0 | 0 | 0 | 3.61 | 1.82 | 1.62 | ||
GCA | TGC | 1 | 1 | 2 (97%)1 | UGC | 2.02 | 2.32 | 2.16 | |
GCG | CGC | 2 | 2 (97%) 1 | 2 | CGC | 3.62 | 2.07 | 2.36 | |
Arg | CGT | ACG | 4 | 3 | 4 (98%) 1 | ICG | 1.05 | 1.59 | 1.60 |
CGC | GCG | 0 | 0 | 0 | 3.18 | 1.45 | 1.75 | ||
CGA | TCG | 1 | 1 | 2 | UCG | 0.73 | 0.9 | 1.58 | |
CGG | CCG | 1 | 1 | 2 | CCG | 1.38 | 1.21 | 1.85 | |
AGA | TCT | 1 | 1 | 2 | UCU | 0.27 | 0.68 | 1.56 | |
AGG | CCT | 1 | 1 | 2 | CCU | 0.55 | 1 | 1.86 | |
Asn | AAT | ATT | 0 | 0 | 0 | GUU | 0.53 | 1.82 | 1.37 |
AAC | GTT | 3 | 2 | 4 | 2.07 | 1.92 | 1.45 | ||
Asp | GAC | GTC | 3 | 2 | 2 | GUC | 3.42 | 2.27 | 1.60 |
GAT | ATC | 0 | 0 | 0 | 1.44 | 2.81 | 1.57 | ||
Cys | TGT | ACA | 0 | 0 | 0 | GCA | 0.42 | 1.09 | 1.78 |
TGC | GCA | 1 | 2 | 2 | 1.46 | 1.13 | 2.34 | ||
Gln | CAA | TTG | 1 | 1 | 2 | UUG | 0.76 | 1.69 | 1.66 |
CAG | CTG | 3 | 2 | 4 | CUG | 3.32 | 2.1 | 1.8 | |
Glu | GAA | TTC | 1 | 1 | 1 | UUC | 1.14 | 3.17 | 2.17 |
GAG | CTC | 2 | 2 | 4 (95%) 1 | CUC | 3.32 | 3.81 | 2.21 | |
Gly | GGT | ACC | 0 | 0 | 0 | GCC | 1.25 | 2.27 | 1.51 |
GGC | GCC | 4 | 3 | 4 | 3.36 | 1.49 | 1.95 | ||
GGA | TCC | 1 | 1 | 2 | UCC | 0.64 | 1.56 | 2.16 | |
GGG | CCC | 1 | 1 | 2 | CCC | 1.19 | 1.39 | 1.64 | |
His | CAT | ATG | 0 | 0 | 0 | GUG | 0.65 | 1.13 | 1.37 |
CAC | GTG | 2 | 1 | 4 (98%) 1 | 2.04 | 1.3 | 1.64 | ||
Ile | ATT | AAT | 3 | 2 | 4 | IAU | 0.82 | 1.9 | 1.42 |
ATC | GAT | 0 | 0 | 0 | 1.88 | 1.16 | 1.10 | ||
ATA | TAT | 1 | 1 | 2 | UAU | 0.27 | 1 | 0.75 | |
Leu | TTA | TAA | 1 | 1 | 2 | UAA | 0.16 | 0.98 | 0.89 |
TTG | CAA | 1 | 1 | 2 | CAA | 1.1 | 1.96 | 2.33 | |
CTT | AAG | 3 | 1 | 4 | IAG | 1.11 | 2.23 | 1.59 | |
CTC | GAG | 0 | 0 | 0 | 2.5 | 1.56 | 1.27 | ||
CTA | TAG | 1 | 1 | 2 | UAG | 0.47 | 0.82 | 0.54 | |
CTG | CAG | 2 | 1 | 2 | CAG | 3.83 | 1.85 | 1.95 | |
Lys | AAA | TTT | 1 | 1 | 2 | UUU | 0.54 | 2.06 | 1.94 |
AAG | CTT | 3 | 3 | 4 | CUU | 2.78 | 2.66 | 1.88 | |
Met | ATG | CAT | 4 | 3 | 6 | CAU | 2.25 | 2.34 | 2.12 |
Phe | TTT | AAA | 0 | 0 | 0 | GAA | 1.04 | 2.05 | 2.17 |
TTC | GAA | 2 | 2 | 4 | 1.91 | 1.59 | 1.49 | ||
Pro | CCT | AGG | 2 | 1 | 2 | IGG | 0.86 | 1.11 | 1.05 |
CCC | GGG | 0 | 0 | 0 | 1.24 | 1.11 | 1.03 | ||
CCA | TGG | 1 | 1 | 2 | UGG | 1.05 | 1.39 | 1.44 | |
CCG | CGG | 2 | 1 | 2 | CGG | 2.61 | 1.18 | 1.57 | |
Ser | TCT | AGA | 1 | 1 | 2 | IGA | 1.02 | 1.26 | 1.37 |
TCC | GGA | 0 | 0 | 0 | 1.69 | 1.25 | 1.24 | ||
TCA | TGA | 1 | 1 | 2 (98%) 1 | UGA | 0.73 | 1.35 | 1.41 | |
TCG | CGA | 1 | 1 | 2 | CGA | 2.17 | 1.16 | 1.2 | |
AGT | ACT | 0 | 0 | 0 | GCU | 0.73 | 1.51 | 1.21 | |
AGC | GCT | 2 (98%) 1 | 2 | 2 | 2.6 | 1.35 | 1.60 | ||
Thr | ACT | AGT | 3 | 1 | 2 | IGU | 0.68 | 1.3 | 1.13 |
ACC | GGT | 0 | 0 | 0 | 1.77 | 1.21 | 1.18 | ||
ACA | TGT | 1 | 1 | 2 | UGU | 1.04 | 1.74 | 1.74 | |
ACG | CGT | 2 | 1 | 2 | CGU | 2.48 | 1.48 | 1.98 | |
Trp | TGG | CCA | 1 | 1 | 2 | CCA | 1.07 | 1.09 | 2.33 |
Tyr | TAT | ATA | 0 | 0 | 0 | GUA | 0.4 | 1.13 | 0.84 |
TAC | GTA | 3 | 1 | 2 | 1.99 | 1.41 | 1.04 | ||
Val | GTT | AAC | 2 | 2 | 2 | IAC | 0.86 | 2.29 | 1.49 |
GTC | GAC | 0 | 0 | 0 | 1.92 | 1.14 | 1.26 | ||
GTA | TAC | 1 | 1 | 2 | UAC | 0.54 | 1.26 | 0.83 | |
GTG | CAC | 2 | 1 | 1 | CAC | 3.82 | 2.87 | 2.65 | |
SeC | TGA | TCA | 1 | 2 | 8 | ||||
TOTAL | 83 | 66 | 120 |