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Table 1 Categorization of chloroplast genomes based on the numbers of homologues to tobacco chloroplast replication origin sequences

From: A comparative approach to elucidate chloroplast genome replication

Category

Sub-category

Species

I

[A]

Aam, Aca

 

[B]

Jnu, Lmi

II

[A]

Pce

III

[A]

Aco, Agr, Atr, Ath, Abe, Ahi, Bve, Bmi, Cbu, Cpa, Csp, Csi, Car, Cwa, Csa, Cre, Dca, Dne, Dgr, Egl, Fes, Gba, Ghi, Lvi, Les, Mes, Min, Nof, Nsy, Nta, Nto, Nad, Opu, Pal, Pgi, Ptr, Rma, Sbu, Sly, Stu, Sol, Vvi

 

[B]

Lma

 

[C]

Ndo

IV

[A]

Cfe, Cfl, Cex, Del, Iol, Nal, Pap, Poc

V

[B]

Acav, Pho

 

[C]

Ast, Aev, Afo, Ami, Bdi, Cde, Cta, Evi, Gab, Gma, Han, Hvu, Hlu, Ipu, Lsa, Lpe, Lja, Oar, Obi, Ogl, Oni, Opa, Osa, Pvu, Shy, Sof, Sbi, Tae, Tca, Wmi, Zma

 

[D]

Ltu

VI

[A]

Chgl, Cvu, Cat, Mvi, Pnu, Sob, Ota, Ppa

 

[B]

Mpo

 

[C]

Mtr

 

[D]

Pko, Pth

VII

[A]

Cja, Lte, Spu, She, Zci

VIII

 

Cre, Chvu, Hsi, Nol, Ovi, Pak, Sun, Oca

  1. Species falling into categories I-VIII and further sub-categories are indicated in this table, according to their abbreviations. Sub-categorization is performed within each category, to accommodate more than one representative genome for a given category (Figures 2, 3, 4, 5, 6, 7 and 8). Category VIII comprises of those genomes which do not bear any homology to any replication origin sequence from the tobacco chloroplast genome.