Figure 2

Schematic of the location of SNPs and indels within the chlamydial plasmids. The strain represented on the outer circle is plasmid pCTA from strain A/HAR-13. The positions of the CDSs are shown, with all CDSs transcribed in a clockwise direction except CDS2. The concentric circles represent (outer to inner): pLGV440, pUCH-1, pL2, pCTB, pJALI, pCHL1, pSW2, pSW3, pSW4, pSW5. The red lines indicate synonymous SNPs, the blue lines non-synonymous SNPs and the grey lines intergenic SNPs. The green bars are bases deleted in that plasmid, and the orange bars are regions of insertion/duplication.