Primate phylogenomics: developing numerous nuclear non-coding, non-repetitive markers for ecological and phylogenetic applications and analysis of evolutionary rate variation

Table 3 Pairwise divergences between some primate species and groups. The Kimura two-parameter model [16] was used to estimate the divergence.

	Kimura two-parameter Distance (×10 ^-2 )
Marker	H-C	H-O	H-MC	H-BA	H-MR	H-SM	H-TA	H-LM	HOM-OWM	HOM-NWM	OWM-NWM
A1	1.30	5.08	8.63	7.18	12.11	11.77	10.64	22.31	8.27	11.79	11.93
A2	0.59	2.00	2.32	2.11	4.91	4.06	5.12	9.31	2.35	4.78	4.33
A3	1.74	0.86	6.32	6.09	13.82	12.31	13.74	22.73	6.57	13.14	13.70
A4	1.96	1.97	6.82	6.14	10.80	10.23	10.39	24.50	6.83	10.94	9.60
A5	0.72	3.29	5.98	5.78	15.30	13.48	12.82	29.08	5.77	13.91	13.54
A6	2.16	4.04	8.28	8.69	17.39	15.18	15.00	34.78	7.36	14.94	16.50
X1	0.62	3.37	9.54	10.24	8.87	8.38	11.49	18.73	9.59	9.76	12.66
X2	2.34	3.64	7.25	6.66	11.24	9.97	10.55	17.71	6.40	10.38	10.97
X3	1.81	2.27	7.01	7.51	6.82	8.03	7.09	18.97	6.84	7.57	10.95
X4	2.16	5.02	9.33	8.89	10.44	11.91	12.55	21.86	8.39	11.83	14.28
Concatenated	1.53	3.24	7.29	6.88	11.22	10.60	10.81	22.07	6.92	10.90	11.80

Note. C = chimpanzee, H = human, G = gorilla, O = orangutan, BA = baboon, MC = macaque, MR = marmoset, SM = spider monkey, TA = tamarin, LM = lemur, HOM = hominoids, NWM = New World monkey, OWM = Old World monkey.

ISSN: 1471-2164