Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont

Table 2 Most highly expressed genes predicted to originate from the host genome^a

Contigs	# of reads (%)	Annotation	Accession SwissProt	Species	E-value
Contig777	259 (2.5)	Elongation factor 2	P05197	Rattus norvegicus	0
Contig642^b	203 (2.0)	Elongation factor 1-alpha	P29520	Bombyx mori	0
Contig643^c	181 (1.8)	Polyadenylate-binding protein 1	P11940	Homo sapiens	1e-177
Contig785^c	178 (1.7)	Polyadenylate-binding protein 4	Q13310	Homo sapiens	8e-30
Contig248	113 (1.1)	Collagen alpha-2(I) chain	Q01149	Mus musculus	6e-41
Contig824^d	110 (1.1)	Apolipophorins	Q9U943	Locusta migratoria	2e-33
Contig174^e	83 (0.8)	no_hits_found	-	-	-
Contig514	79 (0.8)	Catalase	P04040	Homo sapiens	0
Contig1015^b	55 (0.5)	Elongation factor 1-alpha	P29520	Bombyx mori	1e-125
Contig950	51 (0.5)	Collagen alpha-1(II) chain	Q91717	Xenopus laevis	2e-50
Contig262	50 (0.5)	no_hits_found	-	-	-
Contig6	44 (0.4)	no_hits_found	-	-	-
Contig651	43 (0.4)	Adenosylhomocysteinase	P27604	Caenorhabditis elegans	0
Contig1051^f	42 (0.4)	CUB and zona pellucida-like domain-containing protein 1	Q86UP6	Homo sapiens	3e-23
Contig425	41 (0.4)	Peroxidasin homolog	Q92626	Homo sapiens	4e-88

^a BLASTx (E-value cutoff: 1e-5) search in SwissProt (as posted on 08/01/2008). Contig numbering is according to AiptasiaBase_v1.
^b Contigs 642 and 1015 are likely to originate from the same transcript.
^c Contigs 643 and 785 are likely to originate from the same transcript.
^d Best BLAST search hit (with annotation) in nr: von Willebrand factor-like protein (Anthopleura elegantissima) [GenBank:DQ309533].
^e Sequencing error artifact.
^f Best BLAST search hit (with annotation) in nr: mesoglein variant 1 (Aurelia aurita) [GenBank:EF093532].

ISSN: 1471-2164