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Table 1 Induced and strongly induced HMM classes

From: Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing

 

D. melanogaster

D. virilis

 

Binomial probability

Median induction

Binomial probability

Median induction

Strongly induced

0.9034

5.60

0.9950

107.08

Induced

0.7078

1.68

0.7002

2.44

Not regulated

0.5722

1.10

0.4257

0.99

Repressed

0.4607

0.79

0.3170

0.64

Strongly repressed

0.1575

0.17

0.1766

0.35

  1. Binomial probability of observing x infected reads aligned to a base, out of n total reads aligning to that base, estimated based on the HMM described in the text, and median corrected induction (log2 scale) for each class (see Methods for details).