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Table 5 Genes associated with induced regions in D. virilis that lack homologs in D. melanogaster.

From: Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing

D. virilis gene model

Induction State

Induction

Signal Peptide?

Size (kD)

Net Charge

GF_DGIL_SNO_29059273/GF_DGIL_SNO_29059274*

1

716.86

yes

4.13

+1

dvir_GLEANR_6300

2

1.55

yes

4.1

+1

dvir_GLEANR_7739

1

Inf

yes

6.13

+9

dvir_GLEANR_5464

1

61.95

yes

4.71

+4

dvir_GLEANR_3774

2

2.89

yes

4.57

+3

dvir_GLEANR_345

1

26.91

yes

2.23

-2

dvir_GLEANR_5361

2

3.14

yes

2.22

-1

dvir_GLEANR_15023

2

2.22

no

  

dvir_GLEANR_13841

2

2.04

no

  
  1. *These gene models are paralogs
  2. For proteins with a predicted signal peptide, molecular weight and net charge of the predicted mature peptide were computed using the ExPASy web server.
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BMC Genomics

ISSN: 1471-2164

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