Table 1 ExpressSeq read counts that hit* NCBI databases
TSEQ | TSEQ | ODT | ODT | |
|---|---|---|---|---|
MAQC A | MAQC B | MAQC A | MAQC B | |
Total # of Reads | 823,575 | 1,079,508 | 881,555 | 846,304 |
Reads that Hit Human Genomic DNA | 89% | 96% | 97% | 96% |
Reads that Hit Human RefSeq (38,698 sequences) | 60% | 58% | 73% | 67% |
Reads that Hit Human NM's (24,654 sequences) | 53% | 50% | 59% | 45% |
Reads that Hit CCDS (17,751 sequences) | 31% | 23% | 35% | 20% |
Reads that Hit AceView (278,760 sequences) | 77% | 85% | 83% | 84% |
Orphan Reads (Hit none of the above) | 10% | 4% | 3% | 4% |