From: Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'
Coordinates | Length | %GC | BLAST Hits | RNA (strand) | Locus Tag | Flanking Gene Name (Strand) | Locus Tag | Flanking Gene Name (strand) |
---|---|---|---|---|---|---|---|---|
10302–10518 | 217 | 48.85 | 1761 | tmRNA (+) | SAR11_0010 | thyX (-) | SAR11_0011 | COG4696 (-) |
649763–649953 | 191 | 41.88 | 1990 | glycine riboswitch (+) | SAR11_0664 | membrane prot.(+) | SAR11_0666 | gcvT (+) |
493521–493664 | 144 | 36.81 | 888 | 4.5 S RNA (SRP RNA) (+) | SAR11_506 | pheA (+) | SAR11_0507 | dnaX (+) |
1127293–1127553 | 261 | 36.78 | 127 | SAM-II/SAM-V riboswitch (-) | SAR11_1129 | bhmt (-) | SAR11_1730 | hyp. protein (-) |
564786–564910 | 125 | 35.2 | 611 | pntA element (+) | SAR11_0573 | rpmJ (+) | SAR11_0574 | pntA (+) |
38796–39447 | 652 | 34.51 | 2475 | RNase P RNA (-) | SAR11_0033 | mraZ (-) | SAR11_0034 | ybjR (-) |
260190–260348 | 159 | 33.96 | 1615 | ffh motif (-) | SAR11_2356 | ffh (-) | SAR11_0257 | dapF (+) |
626974–627168 | 195 | 33.33 | 1168 |  | SAR11_0641 | recA (+) | SAR11_0642 | protease (-) |
786467–786574 | 108 | 33.33 | 927 | TPP riboswitch (+) | SAR11_0810 | hyp. protein (+) | SAR11_0811 | transporter (+) |
585015–585135 | 121 | 33.06 | 41 |  | SAR11_0599 | COG1729 (+) | SAR11_0600 | mesj (+) |
498458–498706 | 249 | 32.93 | 2398 | glycine riboswitch (-) | SAR11_0510 | glcB (-) | SAR11_0511 | accA (+) |
622388–622552 | 165 | 32.73 | 1301 | SAR11_0636 element (+) | SAR11_0635 | hyp. protein (-) | SAR11_0636 | hyp protein (+) |
1142870–1143031 | 162 | 32.1 | 29 |  | SAR11_1190 | COG0659 (-) | SAR11_1191 | HIT protein (-) |
159067–159166 | 100 | 32 | 25 |  | SAR11_0156 | hyp. protein (-) | SAR11_0157 | ispA (-) |
1292813–1292925 | 113 | 31.86 | 57 |  | SAR11_1357 | livF2 (-) | SAR11_1358 | livG2 (-) |
1120412–1120856 | 445 | 31.46 | 66 |  | SAR11_1164 | lipoprotein (-) | SAR11_1165 | exonuclease (+) |
873155–873283 | 129 | 31.01 | 832 | rpsB motif (+) | SAR11_0906 | dnaE (+) | SAR11_0907 | rpsB (+) |
628285–628539 | 255 | 30.2 | 571 |  | SAR11_0642 | protease (-) | SAR11_0643 | alaS (+) |
1005679–1005890 | 212 | 30.19 | 483 | SAM-V (+) | SAR11_1029 | rplM (-) | SAR11_1030 | metY (+) |
361353–361571 | 219 | 30.14 | 76 |  | SAR11_0369 | grpE (-) | SAR11_0370 | HAM1-like prot. (+) |
1125490–1125606 | 117 | 29.91 | 11 |  | SAR11_1171 | ordL (-) | SAR11_1172 | osmC (-) |
1189853–1189956 | 104 | 29.81 | 25 |  | SAR11_1248 | hyp. protein (+) | SAR11_1249 | hyp. protein (+) |
676100–676308 | 208 | 28.7 | 193 |  | SAR11_0691 | hyp. protein (-) | SAR11_0692 | yajQ (-) |
1212757–1212865 | 109 | 29.36 | 22 |  | SAR11_1279 | membrane prot. (-) | SAR11_1280 | hyp. protein (+) |
732778–732938 | 161 | 29.19 | 446 | SAM-V (-) | SAR11_0750 | mmuM (-) | SAR11_0751 | hyp. protein. (-) |
57720–58035 | 316 | 29.11 | 25 |  | SAR11_0046 | autotransporter (-) | SAR11_0047 | transcription regulator (+) |
120095–120215 | 121 | 28.93 | 211 | bablM element (+) | SAR11_0108 | rnhB (+) | SAR11_0109 | babIM (+) |
762114–762332 | 219 | 28.31 | 55 |  | SAR11_0784 | hyp. protein (+) | SAR11_0785 | hyp. protein (+) |
834435–834636 | 202 | 28.22 | 42 |  | SAR11_0864 | hyp. protein (+) | SAR11_0865 | transporter (+) |
1164239–1164384 | 146 | 28.08 | 0 |  | SAR11_1216 | ecpD (+) | SAR11_1218 | sigB (+) |
52729–52884 | 157 | 28.02 | 22 |  | SAR11_0042 | autotransporter (-) | SAR11_0043 | hyp. protein (-) |
1297623–1297755 | 133 | 27.82 | 480 | rhtB element (-) | SAR11_1362 | rhtB (-) | SAR11_1363 | hyp. protein (+) |
675041–675166 | 126 | 27.78 | 205 |  | SAR11_0690 | hyp. protein (-) | SAR11_0691 | hyp. protein (-) |
762678–763012 | 335 | 27.76 | 76 |  | SAR11_0785 | hyp. protein (+) | SAR11_0786 | qacH (-) |
43688–43789 | 102 | 27.4 | 570 |  | SAR11_0037 | rpoD (-) | SAR11_0038 | dnaG (-) |
791867–792012 | 146 | 27.4 | 125 |  | SAR11_0817 | hupA (+) | SAR11_0818 | amtB (+) |
1132812–1132928 | 117 | 27.35 | 10 |  | SAR11_1178 | pstC (-) | SAR11_1179 | pstS (-) |
1123617–1123934 | 318 | 27.04 | 192 |  | SAR11_1169 | hyp. protein (-) | SAR11_1170 | hyp. protein (-) |
1181972–1182071 | 100 | 27 | 77 |  | SAR11_1238 | sfuC (-) | SAR11_1239 | hyp. protein (-) |
670506–670772 | 267 | 26.97 | 194 |  | SAR11_0685 | moeA (-) | SAR11_0686 | hyp. protein (-) |
1074189–1074359 | 171 | 26.9 | 650 | rpsL motif (-) | SAR11_1121 | rpsL (-) | SAR11_1122 | rpoC (-) |
164139–164261 | 123 | 26.82 | 90 |  | SAR11_0160 | COG0647G (-) | SAR11_0161 | groES (+) |
1245732–1245856 | 125 | 26.4 | 37 |  | SAR11_1309 | hyp. protein (+) | SAR11_1310 | amt (+) |