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Table 1 'Cand. P. ubique' IGRs longer than 100 bp ranked by GC content. IGRs containing tRNA and rRNA removed

From: Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'

Coordinates Length %GC BLAST Hits RNA (strand) Locus Tag Flanking Gene Name (Strand) Locus Tag Flanking Gene Name (strand)
10302–10518 217 48.85 1761 tmRNA (+) SAR11_0010 thyX (-) SAR11_0011 COG4696 (-)
649763–649953 191 41.88 1990 glycine
riboswitch (+)
SAR11_0664 membrane prot.(+) SAR11_0666 gcvT (+)
493521–493664 144 36.81 888 4.5 S RNA
(SRP RNA) (+)
SAR11_506 pheA (+) SAR11_0507 dnaX (+)
1127293–1127553 261 36.78 127 SAM-II/SAM-V riboswitch (-) SAR11_1129 bhmt (-) SAR11_1730 hyp. protein (-)
564786–564910 125 35.2 611 pntA element (+) SAR11_0573 rpmJ (+) SAR11_0574 pntA (+)
38796–39447 652 34.51 2475 RNase P
RNA (-)
SAR11_0033 mraZ (-) SAR11_0034 ybjR (-)
260190–260348 159 33.96 1615 ffh motif (-) SAR11_2356 ffh (-) SAR11_0257 dapF (+)
626974–627168 195 33.33 1168   SAR11_0641 recA (+) SAR11_0642 protease (-)
786467–786574 108 33.33 927 TPP
riboswitch (+)
SAR11_0810 hyp. protein (+) SAR11_0811 transporter (+)
585015–585135 121 33.06 41   SAR11_0599 COG1729 (+) SAR11_0600 mesj (+)
498458–498706 249 32.93 2398 glycine
riboswitch (-)
SAR11_0510 glcB (-) SAR11_0511 accA (+)
622388–622552 165 32.73 1301 SAR11_0636 element (+) SAR11_0635 hyp. protein (-) SAR11_0636 hyp protein (+)
1142870–1143031 162 32.1 29   SAR11_1190 COG0659 (-) SAR11_1191 HIT protein (-)
159067–159166 100 32 25   SAR11_0156 hyp. protein (-) SAR11_0157 ispA (-)
1292813–1292925 113 31.86 57   SAR11_1357 livF2 (-) SAR11_1358 livG2 (-)
1120412–1120856 445 31.46 66   SAR11_1164 lipoprotein (-) SAR11_1165 exonuclease (+)
873155–873283 129 31.01 832 rpsB motif (+) SAR11_0906 dnaE (+) SAR11_0907 rpsB (+)
628285–628539 255 30.2 571   SAR11_0642 protease (-) SAR11_0643 alaS (+)
1005679–1005890 212 30.19 483 SAM-V (+) SAR11_1029 rplM (-) SAR11_1030 metY (+)
361353–361571 219 30.14 76   SAR11_0369 grpE (-) SAR11_0370 HAM1-like
prot. (+)
1125490–1125606 117 29.91 11   SAR11_1171 ordL (-) SAR11_1172 osmC (-)
1189853–1189956 104 29.81 25   SAR11_1248 hyp. protein (+) SAR11_1249 hyp. protein (+)
676100–676308 208 28.7 193   SAR11_0691 hyp. protein (-) SAR11_0692 yajQ (-)
1212757–1212865 109 29.36 22   SAR11_1279 membrane prot. (-) SAR11_1280 hyp. protein (+)
732778–732938 161 29.19 446 SAM-V (-) SAR11_0750 mmuM (-) SAR11_0751 hyp. protein. (-)
57720–58035 316 29.11 25   SAR11_0046 autotransporter (-) SAR11_0047 transcription regulator (+)
120095–120215 121 28.93 211 bablM
element (+)
SAR11_0108 rnhB (+) SAR11_0109 babIM (+)
762114–762332 219 28.31 55   SAR11_0784 hyp. protein (+) SAR11_0785 hyp. protein (+)
834435–834636 202 28.22 42   SAR11_0864 hyp. protein (+) SAR11_0865 transporter (+)
1164239–1164384 146 28.08 0   SAR11_1216 ecpD (+) SAR11_1218 sigB (+)
52729–52884 157 28.02 22   SAR11_0042 autotransporter (-) SAR11_0043 hyp. protein (-)
1297623–1297755 133 27.82 480 rhtB element (-) SAR11_1362 rhtB (-) SAR11_1363 hyp. protein (+)
675041–675166 126 27.78 205   SAR11_0690 hyp. protein (-) SAR11_0691 hyp. protein (-)
762678–763012 335 27.76 76   SAR11_0785 hyp. protein (+) SAR11_0786 qacH (-)
43688–43789 102 27.4 570   SAR11_0037 rpoD (-) SAR11_0038 dnaG (-)
791867–792012 146 27.4 125   SAR11_0817 hupA (+) SAR11_0818 amtB (+)
1132812–1132928 117 27.35 10   SAR11_1178 pstC (-) SAR11_1179 pstS (-)
1123617–1123934 318 27.04 192   SAR11_1169 hyp. protein (-) SAR11_1170 hyp. protein (-)
1181972–1182071 100 27 77   SAR11_1238 sfuC (-) SAR11_1239 hyp. protein (-)
670506–670772 267 26.97 194   SAR11_0685 moeA (-) SAR11_0686 hyp. protein (-)
1074189–1074359 171 26.9 650 rpsL motif (-) SAR11_1121 rpsL (-) SAR11_1122 rpoC (-)
164139–164261 123 26.82 90   SAR11_0160 COG0647G (-) SAR11_0161 groES (+)
1245732–1245856 125 26.4 37   SAR11_1309 hyp. protein (+) SAR11_1310 amt (+)