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Table 1 The 19 E. coli strains analyzed in silico in this study.

From: In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence

Strain

Serotype

Sequence source

LSPA6 lineage

SNP clade

Stx-phage insertion site genotype

EC4024

O157:H7

NZ_ABJT00000000

I/II

8

1

EC4042

O157:H7

NZ_ABHM00000000

I/II

8

1

EC4045

O157:H7

NZ_ABHL00000000

I/II

8

1

EC4076

O157:H7

NZ_ABHQ00000000

I/II

8

1

EC4113

O157:H7

NZ_ABHP00000000

I/II

8

1

EC4115

O157:H7

NZ_ABHN00000000

I/II

8

1

EC4196

O157:H7

NZ_ABHO00000000

I/II

8

1

EC4206

O157:H7

NZ_ABHK00000000

I/II

8

1

EC4401

O157:H7

NZ_ABHR00000000

I/II

8

1

EC4486

O157:H7

NZ_ABHS00000000

I/II

8

1

EC508

O157:H7

NZ_ABHW00000000

I/II

8

1

EC71074

O157:H7

Public Health Agency of Canada

I/II

8

1

EC869

O157:H7

NZ_ABHU00000000

II

uncertain

6

EC4501

O157:H7

NZ_ABHT00000000

I

2

3

TW14588

O157:H7

NZ_ABKY00000000

I

2

3

EDL933

O157:H7

NC_002655.2

I

3

3

Sakai

O157:H7

NC_002695.1

I

1

3

EC33264

O145:NM

Public Health Agency of Canada

NA

NA

NA

MG1655

K12

NC_000913.2

NA

NA

NA