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Table 1 Experimentally identified proteins and protein-protein interactions

From: Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

Number of proteins 1722
Number of proteins with OG 1626
Number of proteins with a BP GO annotation (depth = 5) 1026
Number of proteins with a CC GO annotation (depth = 5) 688
Number of proteins with gene expression data 1821
Number of interactions 3035
Number of interactions with OG 3032
Number of interactions between proteins with sufficient information on different genomic features 1457
Number of interactions with a BP GO annotation (depth = 5, depth = 8) 1457,157
Number of interactions with BP score > = 5, > = 8 913, 123
Number of interactions with a CC GO annotation (depth = 5) 757
Number of interactions with CC score > = 5 565
Number of interactions with gene expression data 2482
Number of interactions with PCC> = 0.3 837
Number of interactions with a BP GO annotation (depth = 5) and expression data 1276
Number of interactions with BP score > = 5 and PCC > = 0.3) 317
Total number of filtered interactions with CC score > = 5 or BP score > = 5 and PCC > = 0.3 or BP score > = 8) 767
  1. Number of proteins and interactions with genomic feature information for Arabidopsis protein-protein interactions from public databases (OG = orthologous group, BP = biological process, CC = cellular component, GO = gene ontology, PCC = Pearson Correlation Coefficient)