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Table 1 Experimentally identified proteins and protein-protein interactions

From: Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

Number of proteins

1722

Number of proteins with OG

1626

Number of proteins with a BP GO annotation (depth = 5)

1026

Number of proteins with a CC GO annotation (depth = 5)

688

Number of proteins with gene expression data

1821

Number of interactions

3035

Number of interactions with OG

3032

Number of interactions between proteins with sufficient information on different genomic features

1457

Number of interactions with a BP GO annotation (depth = 5, depth = 8)

1457,157

Number of interactions with BP score > = 5, > = 8

913, 123

Number of interactions with a CC GO annotation (depth = 5)

757

Number of interactions with CC score > = 5

565

Number of interactions with gene expression data

2482

Number of interactions with PCC> = 0.3

837

Number of interactions with a BP GO annotation (depth = 5) and expression data

1276

Number of interactions with BP score > = 5 and PCC > = 0.3)

317

Total number of filtered interactions with CC score > = 5 or BP score > = 5 and PCC > = 0.3 or BP score > = 8)

767

  1. Number of proteins and interactions with genomic feature information for Arabidopsis protein-protein interactions from public databases (OG = orthologous group, BP = biological process, CC = cellular component, GO = gene ontology, PCC = Pearson Correlation Coefficient)