Skip to main content

Table 2 Predicted protein-protein interactions

From: Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

  #proteins #interactions
Yeast 4662 175322
Yeast CC5 1182 9384
Yeast BP5+PCC 0.3 1249 8986
Yeast BP8 290 1336
Yeast total filtered 1919 16145
Human 3346 28397
Human CC5 694 1821
Human BP5+PCC 0.3 632 1082
Human BP8 185 421
Human total filtered 1089 2795
C. elegans 1549 4174
C. elegans CC5 149 199
C. elegans BP5+PCC 0.3 234 256
C. elegans BP8 70 100
C. elegans total filtered 330 432
Drosophila 3355 19315
Drosophila CC5 430 924
Drosophila BP5+PCC0.3 368 438
Drosophila BP8 87 140
Drosophila total filtered 646 1282
All species – Interologs with CC annotation (CC > = 5) 2123 (1431) 43698 (11891)
All species – Interologs with BP annotation (BP > = 5, BP > = 8) 3087 (2111, 416) 79475 (25037, 1890)
All species – Interologs with gene expression data (PCC > = 0.3) 5369 (4688) 161928 (62178)
All species – Filtered 2233 18674
All species – Predicted 3014 51885
All species – interologs (without filtering) 6206 216972
  1. Number of Arabidopsis proteins and protein-protein interactions detected using different source organisms and different genomic feature filters (BP = biological process, CC = cellular component, PCC = Pearson Correlation Coefficient)