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Figure 2 | BMC Genomics

Figure 2

From: Evaluation of a microarray-hybridization based method applicable for discovery of single nucleotide polymorphisms (SNPs) in the Pseudomonas aeruginosa genome

Figure 2

similarity classes resulting from global alignment of PATA1 oligonucleotides with the PA14 genome. All oligonucleotides present on PATA1 were classified by their similarity to the best matching hit resulting from an sequence alignment with the PA14 genome sequence. Similarity classes: 'ident' – identical sequence in PAO1 and PA14, 'SNP' – single nucleotide polymorphism (SNPs), 'mism' – oligonucleotides with more than a single mismatch but at least 80% sequence identity and with no more than 2 gaps, 'absent' – less than 80% sequence identity or more than 2 gaps.

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