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Table 3 Median signal ratio of SNPs grouped by the bases present in both alleles.

From: Evaluation of a microarray-hybridization based method applicable for discovery of single nucleotide polymorphisms (SNPs) in the Pseudomonas aeruginosa genome

  

corresponding PA14 sequencea

  

A

C

G

T

PATA1 probe (PAO1) a

A

-

-0.50

-0.51

-0.41

   

(1031)

(6807)

(326)

 

C

-0.24

-

-0.35

-0.30

  

(670)

 

(1283)

(5741)

 

G

-0.32

-0.43

-

-0.33

  

(5874)

(1309)

 

(687)

 

T

-0.49

-0.57

-0.45

-

  

(331)

(6574)

(952)

 
  1. Numbers in brackets indicate the abundance of each SNP in our data.
  2. a mismatching nucleotide in the oligonucleotide probe and in the PA14 sequence, respectively.