A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes

BMC Genomics

Table 5 Repetitive sequence composition of Hessian fly BAC ends.

Repeat class	Repeat type	Total bp	% BES	% Total repetitive
Class I transposable elements		62,774	0.47	2.64
	LTRs	36,337		1.52
	Non-LTRs	17,197		0.72
	Unknown	9,240		0.39
Class II transposable elements		45,599	0.34	1.91
	hAT	67		0.00
	Mos 1	39,806		1.66
	mariner
	Other	3,664		0.15
	mariner
	Other	2,062		0.08
Simple sequence repeats		107,962	0.81	4.51
Low-complexity DNA		239,182	1.79	10.00
Ribosomal	rRNA	17,249	0.13	0.72
	tRNA	536	0.00	0.02
	protein	3918	0.03	0.16
Helicases		8,862	0.07	0.37
Gene families & unclassified TEs		1,905,881	14.27	79.68
Total Repetitive		2,391,963	17.91
Total BES		13,351,753

ISSN: 1471-2164