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Table 2 Highly divergent alleles in East Asian strain 98-10

From: Genome sequence analysis of Helicobacter pylori strains associated with gastric ulceration and gastric cancer

Gene number
(98-10)
Gene number (26695) Description % aa identity (98-10)a % aa identity
(non-98-10) b
% unique sites c
HP9810_903g20 HP0061d Hypothetical 67 86 21
HP9810_889g5 HP0492d hpaA homologue 72 92 21
HP9810_889g32 HP0519d sel1 homologue 73 92 15
HP9810_905g13 HP0547 cagA 79 87 11
HP9810_868g41 HP0806d Hypothetical 86 92 6
HP9810_899g75 HP1322d Hypothetical 75 90 18
HP9810_899g76 HP1323d Ribonuclease 88 92 6
HP9810_885g15 HP1524d Hypothetical 80 95 13
  1. a The sequences of the indicated gene products in strain 98-10 were compared with corresponding sequences in each of the other 4 strains (26695, J99, HPAG1 and B128), and mean % amino acid identities were calculated as described in Methods.
  2. b The sequences of the indicated gene products in each strain were compared in all permutations, except that comparisons involving strain 98-10 were excluded from analysis. Mean % amino acid identities were calculated as described in Methods.
  3. cPercentage of aligned sites in which the protein from strain 98-10 contained an amino acid different from the corresponding amino acids in proteins from 4 other strains.
  4. dReported to be a constituent of the H. pylori core genome, based on at least one array analysis [1820].