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Table 4 Twenty most significantly over-represented GO terms in pseudogenes

From: Identification and characterization of pseudogenes in the rice gene complement

GO term Number of pseudogenes Percent of pseudogenes Percent of Osa1 Gene Complement p-value GO term description
GO:0019748 250 36.4 11.7 2.5E-63 Secondary metabolic process
GO:0009058 277 40.3 16.9 1.1E-47 Biosynthetic process
GO:0008150 186 27.1 9.6 3.8E-39 Biological process
GO:0006519 162 23.6 9.0 3.0E-30 Amino acid and derivative metabolic process
GO:0007165 341 49.6 29.0 3.5E-30 Signal transduction
GO:0016301 418 60.8 41.7 2.3E-24 Kinase activity
GO:0005739 248 36.1 19.6 4.0E-24 Mitochondrion
GO:0030246 101 14.7 5.2 7.0E-21 Carbohydrate binding
GO:0009987 254 37.0 21.5 7.1E-21 Cellular process
GO:0016740 216 31.4 17.7 7.9E-19 Transferase activity
GO:0007582 228 33.2 19.5 1.2E-17 Physiological process
GO:0009719 300 43.7 29.3 5.8E-16 Response to endogenous stimulus
GO:0016020 280 40.8 26.8 8.2E-16 Membrane
GO:0006629 103 15.0 6.5 3.2E-15 Lipid metabolic process
GO:0005515 189 27.5 16.3 6.1E-14 Protein binding
GO:0005618 165 24.0 13.9 5.6E-13 Cell wall
GO:0004872 51 7.4 2.5 8.7E-12 Receptor activity
GO:0030154 57 8.3 3.2 5.2E-11 Cell differentiation
GO:0005886 73 10.6 4.7 1.3E-10 Plasma membrane
GO:0006464 138 20.1 11.8 1.8E-10 Protein modification process