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Table 6 Location of candidate donor splice sites within the 185/333 genes

From: A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups

   Purpuratus splice model Vertebrate splice model
Alignment Position1 Element1 Number of Sequences with positive sites+ Average Score Number of Unique sites Number of Sequences with positive sites+ Average Score Number of Unique sites
7 Leader 92 0.9141 2 92 0.3802 2
56 Leader 92 3.6544 2 92 2.0761 2
662 Ex2 38 -0.8232 1 84 0.522 2
697 Ex2 2 3.6456 1 . . .
698 Ex2 . . . 24 0.9431 1
731 Ex3 3 2.116 1 . . .
738 Ex4 38 -0.9527 1 . . .
758 Ex4 . . . 74 0.3271 1
791 Ex4 1 0.3319 1 1 -0.2099 1
806 Ex4 51 2.1556 1 . . .
813 Ex5 3 -0.7904 1 . . .
888 Ex5 2 -0.7852 1 . . .
956 Ex5 5 2.1018 1 . . .
1001 Ex7 . . . 73 -0.2442 1
1031 Ex7 . . . 1 0.7604 1
1034 Ex7 3 -0.0971 1 3 -0.5625 1
1043 Ex7 . . . 90 -0.8223 1
1082 Ex7 92 -0.574 2 . . .
1103 Ex9 80 -0.0487 2 53 -0.8249 1
1107 Ex9 2 1.0598 1 2 -1.1971 1
1127 Ex10 . . . 2 -1.4636 1
1136 Ex10 11 0.4482 1 11 -0.5977 1
1148 Ex11 2 -0.6091 1 2 3.2707 1
1235 Ex13 34 -0.958 1 79 1.3481 3
1271 Ex13 76 -0.8621 2 . . .
1397 Ex16 38 -0.9555 1 38 1.4972 1
1406* Ex17 35 -0.9532 1 35 1.1479 1
1412 Ex17 1 1.5242 1 1 -1.1572 1
1448 Ex17 3 -0.2399 1 3 1.3501 1
1464 Ex17 . . . 34 1.8815 1
1478* Ex18 38 -0.3842 1 . . .
1529 Ex19 84 -0.8774 2 84 1.5862 2
1538 Ex19 29 -0.8506 1 29 1.2722 1
1646* Ex22 79 -0.3887 3 . . .
1697 Ex23 . . . 2 1.4733 1
1895 Ex23 2 -0.1887 1 . . .
1946 Ex23 . . . 2 1.4733 1
2063 Ex24 14 -0.3657 1 . . .
2153 Ex25 92 3.1818 1 92 2.0725 1
2171 Ex25 92 2.4747 3 92 0.5568 3
2183 Ex25 . . . 92 1.4031 1
2215 Ex25 17 -0.8872 1 . . .
2287 Ex25 2 -0.0698 2 89 1.0827 6
  1. 1See [23]
  2. *Indicates that the GT is located at the beginning of the element
  3. +Total number of genes analyzed was 92.