Skip to main content

Table 3 Gene expression in different environments.

From: Natural variation in gene expression in the early development of dauer larvae of Caenorhabditis elegans

Gene LG Start (bp) Gene N2 vs DR1350 RIL-14 vs RIL-17
     T L T × L DI T L DI
mppa-1 I 1740648 Mitochondrial processing peptidase alpha *    **  
Y54E10A.16 I 3246074 -      **  
F27C1.10 I 5433925 - ** ** **    
T09B4.8 I 6164721 Alanine-glyoxylate aminotransferase*      **  
sdha-2 I 10683275 Succinate dehydrogenase complex, subunit A      **  
prx-11 I 12971603 Peroxisome assembly factor ** **     
W04A8.4 I 13841882 -   **    ** **
C50D2.5 II 98402 -      **  
Y110A2AL.4 II 2839303 - * ** ** DR↓    
F12E12.11 II 3742459 - ** **     
acdh-2 II 5547461 Acyl coA dehydrogenase      **  
sra-29 II 6574325 Serpentine receptor, class A      **  
icd-1 II 6587524 Inhibitor of cell death (RNA polymerase II general transcription factor*)   **    **  
T02G5.2 II 7095427 - ** **     
DH11.2 II 8012740 - ** **     
pyr-1 II 8651059 Pyrimidine biosynthesis *    **  
C01G6.7 II 9291932 acs-7 (fatty acid coA syhthetase family) * **   **  
cyp-13A5 II 9798193 Cytochrome P450 family      **  
C05C10.4 II 9931760 pho-11 (intestinal acid phosphatase) * **   **  
B0334.3 II 11489513 Thiamine pyrophosphate-requiring enzyme*      **  
F01D5.1 II 13996851 Secreted surface protein*      **  
F58B6.1 III 1112319 - * ** ** DR↓ *  
Y54H5A.1 III 5153423 Ribosome assembly protein*   **    **  
dhs-9 III 5364479 Dehydrogenase, short chain **    *  
dlc-1 III 6462849 Dynein light chain   **    **  
F44B9.2 III 8022392 -      **  
eif-3.D III 8969556 Eukaryotic initiation factor      **  
iff-1 III 9745765 Initiation factor homologue *    **  
ran-1 III 10746465 Ran GTPase orthologue   **    **  
T28D6.6 III 11326536 GTP-binding protein DRG1      **  
Y111B2A.2 III 12495966 - *    **  
Y37D8A.18 III 12926440 Mitochondrial ribosomal protein S10*   **    **  
abce-1 III 13153697 ABC transporter class E ** **   ** **
tag-61 III 13463042 ant-1.1 (adenine nucleotide translocator)      **  
K02D7.1 IV 292425 Purine nucleoside phosphorylase* * **   **  
C18H7.1 IV 615544 von Willebrand factor and related coagulation proteins*      **  
K03H6.2 IV 1510563 - * ** ** N2↑    
C17H12.4 IV 6798908 Carboxylesterase and related proteins* *   ** **  
D2096.8 IV 8377687 Nucleosome assembly protein*   **    **  
T20D3.3 IV 9333319 -   **    **  
C08F8.2 IV 11149161 Mitochondrial RNA helicase SUV3*   **    **  
kin-4 IV 11436618 Protein kinase      **  
F08G5.6 IV 12435797 - **    ** **
clec-186 IV 12866085 C-type lectin **   ** *  
F55G11.2 IV 12967418 - ** **   *  
F49E11.11 IV 13059587 scl-3 (SCP-like extracellular protein) **    **  
C39E9.4 IV 13068737 scl-6 (SCP-like extracellular protein) *    **  
ugt-22 IV 13639234 UDP-glucuronosyl transferase **    **  
Y43D4A.2 IV 16744614 - ** **   *  
ZK550.6 IV 17260269 Peroxisomal phytanoyl-CoA hydroxylase* ** **   **  
C49C3.7 IV 17332528 -      **  
dod-19 V 411783 Downstream of DAF-16 *    **  
C14C6.5 V 536629 - **      
W07B8.4 V 1130090 Cysteine proteinase Cathepsin L* **   ** *  
Y19D10A.9 V 2351676 clec-29 (C-type lectin) ** **   **  
F56A4.10 V 2461320 Permease of the major facilitator superfamily* ** **   **  
cyp-35A5 V 3936359 Cytochrome P450 family *    **  
T22F3.11 V 3612160 Permease of the major facilitator superfamily* **    **  
F13H6.4 V 6366416 Carboxylesterase and related proteins* **      
ugt-41 V 7161049 UDP-glucuronosyl transferase *    **  
cyp-35A2 V 7362298 Cytochrome P450 family **    * **
srx-3 V 9005518 Serpentine receptor, class X * ** ** N2↓    
dhs-18 V 11045678 Dehydrogenase, short chain ** **   *  
snf-11 V 11305047 Sodium neurotransmitter symporter family      **  
F35B12.4 V 11609217 Serine proteinase inhibitor*   **    **  
F45D3.4 V 12552186 -   **    **  
ugt-16 V 12825004 UDP-glucuronosyl transferase *    **  
T16G1.4 V 12940017 Small molecule kinase* *    **  
F35E12.5 V 13737072 - **    **  
cyp-35C1 V 13898467 Cytochrome P450 family **    **  
ret-1 V 14829155 Reticulon protein      **  
cdr-1 V 15921335 Cadmium responsive *    **  
nhr-127 V 16262268 Nuclear hormone receptor family ** **   *  
T26H2.5 V 19230746 - **    *  
daf-28 V 19810833 Beta-type insulin * **   ** **
K02E2.7 V 20380157 -      ** **
B0310.3 X 510900 -      **  
T10H10.2 X 2294743 FAD-dependent sulfhydryl oxidase/quiescin and related proteins*   **    ** **
tag-18 X 3731903 - * **   ** **
amt-1 X 4571419 Ammonium transporter homologue * ** ** N2↑    
F13D11.3 X 5804348 - ** **     
nnt-1 X 6122273 Nicotinamide nucleotide transhydrogenase *    **  
C46F2.1 X 8077686 -      **  
D2021.8 X 8552200 - ** ** **    
C35C5.8 X 11533977 - *    **  
cah-4 X 13542493 Carbonic anhydrase *    **  
F23D12.3 X 14442540 - ** **     
egrh-1 X 14845856 Early growth factor response factor homologue      **  
F09B12.3 X 15095252 - *    **  
  1. The 89 genes, their linkage group (LG) and location (Start), whose expression is significantly affected by TREATMENT (T), or TREATMENT × LINE (T × L) at p < 0.001 (**) and under dauer larva-inducing (DI) conditions up (↑) or down (→) regulation, and this specified for N2 or DR1350 specific TREATMENT × LINE effects. For these genes (above) other significant TREATMENT (p < 0.05 and p < 0.001) and LINE (L) (p < 0.001) only effects are also reported, with p < 0.05 and p < 0.001 shown by * and **, respectively. Gene is the WormBase gene identification [41], with NCBI KOGs shown by *.