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Table 1 Transcription Factor Binding in Ivanova et al Networks

From: Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

Unsigned Network
Module No. of genes Oct4Complex cMycComplex Suz12
blue 899 0.863, 0.232 1.09, 0.0398 0.956, 0.366
brown 1241 0.862, 0.179 0.757, 3.09e-09 1.92, 2.5e-21
green 1556 0.825, 0.0832 0.811, 1.78e-07 1.13, 0.0496
grey 7407 1.16, 2.37e-05 1.18, 4.62e-45 0.866, 2.17e-07
red 1673 1.1, 0.169 1.68, 6.75e-74 0.281, 7.61e-28
turquoise 5721 0.898, 0.0268 0.801, 4.3e-36 1.2, 6.96e-10
yellow 1053 1.14, 0.15 1.46, 5.74e-22 0.458, 7.39e-10
Signed Network
black 941 2.9, 7.25e-24 1.83, 4.8e-58 0.288, 1.95e-15
blue 220 0.608, 0.165 0.488, 1.59e-07 1.93, 4.42e-05
brown 1090 0.736, 0.0402 0.754, 2.04e-08 1.99, 3.27e-21
cyan 581 0.783, 0.174 0.931, 0.15 1.78, 2.58e-08
green 1538 0.731, 0.0138 0.778, 1.14e-09 1.12, 0.0534
grey 4428 0.949, 0.224 0.853, 2.38e-14 1.13, 0.000604
magenta 514 1.09, 0.286 1.11, 0.0548 0.824, 0.122
midnightblue 649 1.61, 0.00131 1.89, 2.87e-45 0.181, 6.99e-15
pink 2242 1.4, 4.41e-05 1.85, 8.63e-160 0.341, 3.32e-31
red 1270 1.01, 0.429 1.56, 1.19e-37 0.371, 8.07e-16
salmon 650 1.03, 0.388 1.19, 0.00083 0.67, 0.00378
tan 445 2.16, 4.62e-06 1.71, 4.65e-21 0.37, 3.14e-06
turquoise 5205 0.679, 2.41e-09 0.749, 3.51e-49 1.24, 2.71e-11
yellow 1042 1.05, 0.326 1.35, 1.9e-13 0.633, 4.69e-05
  1. Enrichment for binding by the Oct4 and cMyc TF Groups and Suz12.
  2. Each enrichment score (before the comma) is followed by its corresponding p-value (after the comma) calculated from the hyper-geometric distribution. P-values are uncorrected for multiple comparisons.