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Table 3 Transcription Factor Binding in Zhou et al Networks

From: Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

Unsigned Network
Module No. of genes Oct4Complex cMycComplex Suz12
black 2659 1.55, 2.08e-09 1.4, 4.18e-46 0.666, 6.21e-10
blue 1484 0.872, 0.172 1.09, 0.0125 1.01, 0.447
brown 992 1.2, 0.093 1.02, 0.315 1.11, 0.127
green 1493 0.758, 0.028 0.863, 0.000186 1.36, 4.79e-06
grey 7318 0.766, 1.87e-08 0.803, 1.69e-51 1.2, 7.19e-14
magenta 1583 0.919, 0.28 1.04, 0.147 1.1, 0.0982
red 2593 1.48, 2.3e-07 1.64, 4.02e-107 0.437, 2.49e-26
turquoise 838 0.997, 0.459 1.3, 1.74e-08 0.829, 0.0631
yellow 2002 1.08, 0.213 1.1, 0.00171 0.844, 0.0106
Signed Network
black 1859 1.94, 2.94e-15 1.4, 4.22e-30 0.523, 2.19e-13
blue 1972 0.656, 0.000465 1.03, 0.18 1.13, 0.03
brown 1267 1.45, 0.000755 1.72, 1.22e-59 0.411, 5.78e-14
green 1548 0.818, 0.0763 0.933, 0.0414 1.27, 0.000329
grey 7175 0.729, 1.64e-10 0.784, 2.34e-59 1.24, 2.7e-18
pink 659 0.941, 0.432 1.27, 5e-06 0.474, 2.48e-06
red 2184 1.48, 2.18e-06 1.63, 1.7e-85 0.493, 9.37e-18
turquoise 2317 0.896, 0.156 1.05, 0.0498 1.09, 0.0716
yellow 1870 1.17, 0.0587 1.05, 0.0545 0.885, 0.054
  1. Module enrichments for binding by the Oct4 and cMyc TF Groups amd Suz12. Each enrichment score (before the comma) is followed by its corresponding p-value calculated from the hyper-geometric distribution (uncorrected for multiple comparisons).