Table 2 Tandem segmental duplications in C. elegans of size 1,000 or larger
From: Polymorphic segmental duplication in the nematode Caenorhabditis elegans
Coordinates Dup1 | Coordinates Dup2 | Matches (bp) | Orientation | N Genes Dup1 | N Genes Dup2 | Associated Transposons |
|---|---|---|---|---|---|---|
V:2347883..2454596 | V:2455844..2562875 | 106707 | F | 26 | 26 | Cemar1 |
V:8813143..8850811 | V:8855237..8892906 | 37642 | F | 11 | 13 | TC5, Cer9 |
III:1251054..1258404 | III:1259414..1266845 | 7339 | F | 4 | 4 | NO |
IV:12471444..12478970 | IV:12478981..12486507 | 7527 | F | 3 | 3 | NO |
X:226651..231363 | X:236067..240779 | 4713 | F | 3 | 3 | NDNAX1 |
IV:5241391..5244977 | IV:5246223..5249809 | 3587 | R | 3 | 3 | NO |
I:12627236..12632544 | I:12635161..12640469 | 5304 | R | 2 | 2 | NO |
X:1940626..1945025 | X:1949155..1953554 | 4399 | F | 2 | 2 | NO |
V:9087269..9088593 | V:9089256..9090580 | 1325 | R | 2 | 2 | NO |
X:3558880..3563952 | X:3567445..3572527 | 4985 | F | 1 | 1 | NO |
IV:13129621..13133199 | IV:13135213..13138791 | 3579 | F | 1 | 1 | NDNAX3 |
I:11616806..11620253 | I:11623105..11626552 | 3448 | R | 1 | 1 | NO |
IV:4348439..4351841 | IV:4352611..4356013 | 3403 | R | 1 | 1 | NO |
X:4333166..4336008 | X:4339618..4342467 | 2823 | R | 1 | 1 | NO |
II:11757121..11759167 | II:11759614..11761660 | 2047 | R | 1 | 1 | NO |
V:13967844..13969831 | V:13974541..13976528 | 1988 | R | 1 | 1 | NO |
III:7171786..7173519 | III:7174002..7175735 | 1734 | R | 1 | 1 | NO |
IV:16339625..16341334 | IV:16342450..16344159 | 1710 | R | 1 | 1 | NO |
III:11787629..11789338 | III:11790417..11792126 | 1709 | R | 1 | 1 | NO |
III:2433538..2435215 | III:2436093..2437770 | 1678 | R | 1 | 1 | NO |
I:11303731..11305210 | I:11308113..11309592 | 1480 | R | 1 | 1 | NO |
IV:1617460..1618943 | IV:1622242..1623725 | 1481 | R | 1 | 1 | NO |
II:3588277..3589715 | II:3592045..3593483 | 1439 | R | 1 | 1 | NO |
IV:9284870..9286382 | IV:9292363..9293902 | 1466 | F | 1 | 1 | NO |
IV:2566235..2567558 | IV:2569372..2570695 | 1324 | R | 1 | 1 | NO |
IV:16766557..16767821 | IV:16768481..16769745 | 1265 | R | 1 | 1 | LINE2 |
X:8319606..8320838 | X:8322049..8323281 | 1233 | R | 1 | 1 | NO |
I:11355228..11356362 | I:11358159..11359293 | 1135 | R | 1 | 1 | NO |
I:13890329..13891445 | I:13893120..13894236 | 1117 | R | 1 | 1 | NO |
II:13079317..13080572 | II:13082405..13083577 | 1173 | R | 1 | 1 | NO |
IV:5232834..5233864 | IV:5236511..5237541 | 1031 | R | 1 | 1 | NO |