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Table 1 Sequences (5'-3'), optimal annealing temperatures (°C) and amplified fragment sizes (base pairs) for primers used in the study.

From: Horizontal gene transfer between Wolbachia and the mosquito Aedes aegypti

 

primer sequence

product

size (bp)

optimal annealing temperature (°C)

WP1346a*

F-TGGTTGGTCACTACCACGAA

R-ACCATTCGGCACTGAAACAT

432

54

WP1346b

F-TGAGCATGGTCGTTTATTGG

R-CGCACATCTTTCATCCAGAG

453

54

WP1346c

F-TCAATCTCGCAAGTTGATGC

R-AAATGACCTTGAACGGAAGC

529

54

WP1348*

F-ACGACAAGCCTTTTCCTTTG

R-TAATATTGCCGGGCTTGTTC

355

54

WP1349a*

F-TGGATGTGCGACGTTCTAAG

R-TCGGCTGGTAATCCTTTTTG

399

54

WP1349b

F-GTGGAATTTTGAAGGCCAAG

R-AGGCCCAACATTTTCTTGTG

372

54

AAEL004181a*

F-TTCTCCGACCAGATTTTTCC

R-AGAAATGTCCCGCCCTTATC

370

54

AAEL004181b*^†

F-GAACAAGGGGATCAAGCAAA

R-CTTGAATGACCCGAGTGAGA

475

54

AAEL004181c*^

F-CGGAACTCTGGTGGGTACAT

R-AGACGTTCGCTTGAAAATCG

388

55

AAEL004181d

F-catcggttattgaaccggatac

R-caacttcactattctgccaacg

296

54

AAEL004181e

F-tcttccgataggttacggattg

R-tcgatgtataagcctccatcaac

251

54

AAEL004181f*†

F-ACAACCAGTGGAATCCTTCG

R-GTTCTCATTTGCGACCCAAT

318

55

AAEL004181g†

F-cgctgaaactgtacagacaagg

R-tttcattcgtgttgaagtggtc

273

54

AAEL004181h†

F-acaccactttcgattgtcattg

R-ggcccttcatagctgtagtgac

260

54

AAEL004181i*^

F-GCCATCATCAGGAACCAATC

R-CTGATTGCAGCGAGAAATGA

317

55

AAEL004188*†

F-TGGACACAAAGACCCATTCA

R-AAAACTGGGTGCTTCCATTG

447

53

  1. *denotes primers used for RT-PCR to determine gene expression. ^denotes primers designed to span three introns present in the Aedes aegypti Vectorbase annotation for AAEL004181. †denotes primers used for sequencing Aedes mascarensis PCR products.