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Table 2 Putative TSDs flanking TvMULEs and the unknown repeat

From: The protist Trichomonas vaginalis harbors multiple lineages of transcriptionally active Mutator-like elements

Family

TSD

 

Length (bp)

Sequence

TvMULE2

10

ATATATCGGC

  

TTTATCGCTGa

 

11

AATTGATGAAA

  

CCTTAATTCAA

  

CCATTTTGATA

  

TAATTCTCCAT

  

TTTCCCTGAAA

  

TGGTTTTATGA

  

GAAACAATTAA

 

12

TTAAATTACTTC

 

14

AATTAAAAAAATAT

TvMULE3

11

CTATTTAAAAG

  

TTTTTTGATAA

  

TTTAAGGTGTT

TvMULE4

12

AAAAAATTTTGA

  

AATTTTTTCGAA

  

ATATATCTTTAA

  

ATTTTTGAAAAA

  

TATACATATATA

  

TTATTATTTTAA

  

TTTCTTTTTTAT

 

13

AAAAATTTTGAAA

  

ATTTTTTCTGGAT

  

AGATTTTTGAAAA

  

CTTATTTTTTGAA

  

TTTCAAAATTTTT

Unknown

8

TAGATTTTb

 

9

ATCAAAAAGc

  1. aDuplication upon the chosen canonical copy;
  2. Duplication upon the insertion contained in the: bcontig 85938 and ccontig91860.