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Table 1 Summary statistics of the Pacific oyster cDNA libraries.

From: Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase

Description Tissue Vector used No. of sequences retrieved No. of valid sequences Average length insert (bp)
cDNA gonad * gonad PAL32CV 12162 8809 511
cDNA embryos and larvae and central nervous system (GENOSCOPE) embryos, larvae, CNS pAL17.3 13191 12730 618
cDNA hemocytes (GENOSCOPE) hemocyte pBluscriptIISK+ 14472 13773 415
cDNA digestive gland subtracted library (AQUAFIRST) digestive gland PCR2.1 1536 1362 428
cDNA mantle-edge subtracted library (AQUAFIRST) mantle-edge PCR2.1 1536 1343 405
cDNA hemocyte subtracted library (AQUAFIRST) hemocyte PCR2.1 1152 125 291
cDNA gonad subtracted library (AQUAFIRST) gonad PCR2.1 768 559 382
cDNA muscle subtracted library (AQUAFIRST) muscle PCR2.1 1536 1117 312
cDNA gills subtracted library (AQUAFIRST) gills PCR2.1 1536 1027 359
Total    47889 40845 Mean: 413
  1. * Library partially published in Tanguy et al.[25] with 1894 sequenced clones.
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BMC Genomics

ISSN: 1471-2164

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