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Table 1 CNVs detected in duck (Anas platyrhynchos) relative to chicken reference DNA.

From: Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis

CNV Chicken chromosome Start (bp) Stop (bp) Size (kb) Fold change c.f. Red Junglefowl Comments
1 ab 1 140580435 140655038 74.603 -4.23 Novel genes
2 3 107012500 108262500 1250 -1.43 Mitochondrial oxidoreductase (β-oxidation cycle)
3 ab 3 113237500 113651334 413.834 -1.73 39S ribosomal protein L19 (ribosomal subunit)
4 3 113605240 113652668 47.428 -3.88 39S ribosomal protein L19 (ribosomal subunit)
5 b 4 88710224 89072982 362.758 -1.61 Histone demethylation protein
6 6 37387597 37400184 12.587 -1.86  
7 7 352 5048 4.696 -2.66  
8 7 38350336 38380092 29.756 -2.85 N-acetyltransferase 5 (acetylation of amino-terminal methionine residues)
9a 8 102 35016 34.914 -3.54  
10 10 252 27706 27.454 -1.54 Novel genes
11 10 22517883 22537510 19.627 -2.26  
12a 11 202 15241 15.039 -8.50  
13 11 12500 62500 50 -1.41 Novel genes
14a 11 2675046 3190227 515.181 -2.76 Centromere
15a 12 12500 62500 50 -2.86 Senescent cell antigen-like-containing domain protein (Plays a role in modulating cell spreading and migration)
16 13 4932529 4935329 2.8 3.75 Teneurin 2 (transcription factor activity)
17b 13 18865302 18907544 42.242 -2.28  
18 15 10240354 10295196 54.842 2.29 Novel genes
19 b 16 352 432851 432.499 -1.43 Covers all GGA16 sequence available; MHC
20 16 262500 287500 25 1.50 Predicted similar to MHC Rfp-Y class I alpha chain
21a 17 802976 867945 64.969 1.99 Neural proliferation differentiation and control protein
22 18 1812500 1837500 25 -1.46 Novel genes
23 19 3665182 3845095 179.913 1.48 Myosin regulatory light chain, cardiac muscle isoform
24 22 3912586 3935246 22.66 1.43 Similar to 2-oxoglutarate dehydrogenase (TCA cycle)
25 26 481 5060 4.579 -1.92  
26 26 4577801 4750398 172.597 1.62 Forkhead box protein; MyoD family inhibitor (transcriptional regulators)
27a 26 2911 837508 834.597 -1.79 Novel proteins
28a 28 2 12526 12.524 -7.87  
29 28 12500 62500 50 -2.48 Major vault protein (ribonucleoprotein complex)
30 E64 402 45047 44.645 -1.43 Predicted similar to ligase (DNA replication)
31 Z 2090459 6530135 4439.676 1.59 Synaptotagmin-4 (neurotransmitter secretion)
32 ab Z 71512500 71762500 250 -5.09 Novel genes
  1. a CNVs found in both individuals
  2. b CNVs also seen in turkey [2]
  3. The 5 CNVs overlapping the 5 potential hotspots from [2] are bolded.