Table 1 CNVs detected in duck (Anas platyrhynchos) relative to chicken reference DNA.
From: Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis
CNV | Chicken chromosome | Start (bp) | Stop (bp) | Size (kb) | Fold change c.f. Red Junglefowl | Comments |
|---|---|---|---|---|---|---|
1 ab | 1 | 140580435 | 140655038 | 74.603 | -4.23 | Novel genes |
2 | 3 | 107012500 | 108262500 | 1250 | -1.43 | Mitochondrial oxidoreductase (β-oxidation cycle) |
3 ab | 3 | 113237500 | 113651334 | 413.834 | -1.73 | 39S ribosomal protein L19 (ribosomal subunit) |
4 | 3 | 113605240 | 113652668 | 47.428 | -3.88 | 39S ribosomal protein L19 (ribosomal subunit) |
5 b | 4 | 88710224 | 89072982 | 362.758 | -1.61 | Histone demethylation protein |
6 | 6 | 37387597 | 37400184 | 12.587 | -1.86 | Â |
7 | 7 | 352 | 5048 | 4.696 | -2.66 | Â |
8 | 7 | 38350336 | 38380092 | 29.756 | -2.85 | N-acetyltransferase 5 (acetylation of amino-terminal methionine residues) |
9a | 8 | 102 | 35016 | 34.914 | -3.54 | Â |
10 | 10 | 252 | 27706 | 27.454 | -1.54 | Novel genes |
11 | 10 | 22517883 | 22537510 | 19.627 | -2.26 | Â |
12a | 11 | 202 | 15241 | 15.039 | -8.50 | Â |
13 | 11 | 12500 | 62500 | 50 | -1.41 | Novel genes |
14a | 11 | 2675046 | 3190227 | 515.181 | -2.76 | Centromere |
15a | 12 | 12500 | 62500 | 50 | -2.86 | Senescent cell antigen-like-containing domain protein (Plays a role in modulating cell spreading and migration) |
16 | 13 | 4932529 | 4935329 | 2.8 | 3.75 | Teneurin 2 (transcription factor activity) |
17b | 13 | 18865302 | 18907544 | 42.242 | -2.28 | Â |
18 | 15 | 10240354 | 10295196 | 54.842 | 2.29 | Novel genes |
19 b | 16 | 352 | 432851 | 432.499 | -1.43 | Covers all GGA16 sequence available; MHC |
20 | 16 | 262500 | 287500 | 25 | 1.50 | Predicted similar to MHC Rfp-Y class I alpha chain |
21a | 17 | 802976 | 867945 | 64.969 | 1.99 | Neural proliferation differentiation and control protein |
22 | 18 | 1812500 | 1837500 | 25 | -1.46 | Novel genes |
23 | 19 | 3665182 | 3845095 | 179.913 | 1.48 | Myosin regulatory light chain, cardiac muscle isoform |
24 | 22 | 3912586 | 3935246 | 22.66 | 1.43 | Similar to 2-oxoglutarate dehydrogenase (TCA cycle) |
25 | 26 | 481 | 5060 | 4.579 | -1.92 | Â |
26 | 26 | 4577801 | 4750398 | 172.597 | 1.62 | Forkhead box protein; MyoD family inhibitor (transcriptional regulators) |
27a | 26 | 2911 | 837508 | 834.597 | -1.79 | Novel proteins |
28a | 28 | 2 | 12526 | 12.524 | -7.87 | Â |
29 | 28 | 12500 | 62500 | 50 | -2.48 | Major vault protein (ribonucleoprotein complex) |
30 | E64 | 402 | 45047 | 44.645 | -1.43 | Predicted similar to ligase (DNA replication) |
31 | Z | 2090459 | 6530135 | 4439.676 | 1.59 | Synaptotagmin-4 (neurotransmitter secretion) |
32 ab | Z | 71512500 | 71762500 | 250 | -5.09 | Novel genes |