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Table 2 Representative insert types for discovery over the SV spectrum

From: Statistical aspects of discerning indel-type structural variation via DNA sequence alignment

insert type λ (kb) COV (%) r (bp)
Illumina GA shorta 0.25 12 50
Illumina GA intermediateb 3 12 50
454c 3.2 25 250
Illumina GA longd 10 12 50
fosmide 39.9 7 600
BACf 136.4 21 600
  1. arepresentative of < 1 kb inserts, see e.g. refs. [4, 29]
  2. binsert length representative of extended chemistry protocols for 2–5 kb inserts, see e.g. ref. [33]
  3. clibrary parameters reported in ref. [8]
  4. dexperimental, not currently in routine use
  5. elibrary parameters reported in ref. [6]
  6. fprimary breast tumor library B421, see ref. [11]