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Table 3 Transposable elements identified in the late larval (L), early pupal (P1) and mid pupal (P2) EST libraries.

From: Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae)

   

# of clusters with TE hit

Transposable Element

Type

Class

Total

L

P1

P2

297

Retroviral

I

1

1

0

0

412

Retroviral

I

2

2

0

0

1731

Retroviral

I

2

2

0

0

3S18

Retroviral

I

2

2

0

0

baggins

non-LTR retrotransposon

I

7

4

1

2

blood

Retroviral

I

2

2

0

0

Burdock

Retroviral

I

1

1

0

0

Cr1a

non-LTR retrotransposon

I

1

1

0

0

Dana\Tom

Retroviral

I

1

1

0

0

Dbuz\Osvaldo

Retroviral

I

1

1

0

0

diver

Retroviral

I

2

2

0

0

diver2

Retroviral

I

4

4

0

0

Dm88

Retroviral

I

4

4

1

0

Dmer\R1A3

non-LTR retrotransposon

I

2

2

0

0

Dmir\TRAM

Retroviral

I

1

1

0

0

Dmir\TRIM

Retroviral

I

3

2

1

0

Doc

non-LTR retrotransposon

I

7

6

1

0

Doc2-element

non-LTR retrotransposon

I

3

3

0

0

Doc3-element

non-LTR retrotransposon

I

3

2

1

0

Doc4-element

non-LTR retrotransposon

I

1

1

0

0

Dsil\Loa

non-LTR retrotransposon

I

4

4

0

0

Dsub\bilbo

non-LTR retrotransposon

I

11

10

1

0

Dvir\Helena

non-LTR retrotransposon

I

1

1

0

0

Dvir\Paris

IR-elements

I

2

1

1

0

Dvir\Penelope

non-LTR retrotransposon

I

5

4

0

1

Dvir\Tel

Retroviral

I

1

1

0

0

F-element

non-LTR retrotransposon

I

8

8

0

0

flea

Retroviral

I

5

5

0

0

Fw2

non-LTR retrotransposon

I

1

0

1

0

G-element

non-LTR retrotransposon

I

1

1

0

0

G2

non-LTR retrotransposon

I

1

1

0

0

G3

non-LTR retrotransposon

I

6

5

0

1

G4

non-LTR retrotransposon

I

10

9

0

1

gtwin

Retroviral

I

2

2

0

0

gypsy4

Retroviral

I

1

1

0

0

gypsy8

Retroviral

I

1

1

0

0

gypsy9

Retroviral

I

1

1

0

0

Helena

non-LTR retrotransposon

I

1

1

0

0

Helitron

Helitron

I

2

2

1

0

HMS-Beagle

Retroviral

I

3

3

0

0

invader3

Retroviral

I

2

2

0

0

invader6

Retroviral

I

1

1

0

0

Ivk

non-LTR retrotransposon

I

1

0

0

1

jockey

non-LTR retrotransposon

I

1

1

0

0

Max-element

Retroviral

I

4

3

1

0

McClintock

Retroviral

I

1

1

0

0

mdg1

Retroviral

I

1

1

0

0

Osvaldo

Retroviral

I

2

2

0

0

Porto1

non-LTR retrotransposon

I

11

10

0

1

R2-element

non-LTR retrotransposon

I

2

2

0

0

roo

Retroviral

I

3

3

0

0

rooA

Retroviral

I

1

1

0

0

rover

Retroviral

I

1

1

0

0

Rt1b

non-LTR retrotransposon

I

2

2

0

0

springer

Retroviral

I

1

1

0

0

Stalker

Retroviral

I

1

1

0

0

TAHRE

non-LTR retrotransposon

I

1

1

0

0

Tirant

Retroviral

I

2

2

0

0

Transpac

Retroviral

I

7

5

1

1

X-element

non-LTR retrotransposon

I

1

1

0

0

ZAM

Retroviral

I

1

1

0

0

Bari1

IR-elements

II

1

1

0

0

Dhet\Uhu

IR-elements

II

4

4

0

0

Dhyd\Minos

IR-elements

II

1

1

0

0

Dmau\mariner

IR-elements

II

14

13

2

1

hobo

IR-elements

II

2

2

0

0

S-element

IR-elements

II

1

1

0

0

S2

IR-elements

II

1

1

0

0

Tc1

IR-elements

II

1

1

0

0

Tc1-2

IR-elements

II

1

1

0

0

Tc3

IR-elements

II

1

1

0

0

Total

  

191

173

13

9