Grapevine cell early activation of specific responses to DIMEB, a resveratrol elicitor

Zamboni, Anita; Gatto, Pamela; Cestaro, Alessandro; Pilati, Stefania; Viola, Roberto; Mattivi, Fulvio; Moser, Claudio; Velasco, Riccardo

doi:10.1186/1471-2164-10-363

BMC Genomics

Table 1 List of transcripts modulated by DIMEB and reported in the Discussion

From: Grapevine cell early activation of specific responses to DIMEB, a resveratrol elicitor

ID^a	Description	Uniprot ID^b	TC-ID^c	2 h	6 h
				+	+	-
Signal trasduction
CLU090	Kinase associated protein phosphatase	P46014	EC987592	x
1608981_at	Putative phospholipase	Q8RXN7	TC69626		x
1620080_at	Putative receptor-like protein kinase ARK1	Q5ZAK8	CB922377		x
1611172_at	SOS2-like protein kinase	Q8LK24	TC52484		x
Transcription factors
1619311_at	Pathogenesis-related genes transcriptional activator PTI5	O04681	TC55556		x
1611285_s_at	Probable WRKY transcription factor 11	Q9SV15	TC65678		x
CLU059	TGA10 transcription factor	Q52MZ2	TC99087	x
1610775_s_at	WRKY transcription factor-b	Q5DJU0	TC55553		x
Effector genes
Phe biosynthesis
CLU083	3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase precursor	O24051	TC74975	x
1611211_at	3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase precursor	O24046	TC57386		x
1614440_at	3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase	Q6YH16	TC54321		x
1619357_at	3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase	O24046	TC57642		x
1621405_at	Plastidic 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2	O22407	TC51974		x
1609646_at	3-Dehydroquinate synthase-like protein	Q9FKX0	TC56854		x
1609932_at	Prephenate dehydratase	Q6JJ29	TC53641		x
1621307_at	Prephenate dehydratase	Q6JJ29	TC53641		x
1611895_at	Putative chorismate mutase	Q5JN19	TC62307		x
General phenylpropanoid metabolism
1613113_at	Phenylalanine ammonia lyase	Q6UD65	TC60180
CLU024	Trans-cinnamate 4-monooxygenase	Q43240	TC71512	x
1610821_at	Cinnamic acid 4-hydroxylase	Q948S8	TC70715		x
1616191_s_at	Cinnamic acid 4-hydroxylase	Q948S8	TC70715		x
1615801_at	4-Coumarate:CoA ligase	Q5S017	TC60943		x
1619320_at	4-Coumarate--CoA ligase 2	P31687	TC66743		x
Stilbene biosynthesis
CLU009	Stilbene synthase	Q9SPW2	TC89701	x
CLU022	Stilbene synthase	Q6BAU9	TC89632	x
CLU023	Stilbene synthase	P28343	TC84974	x
CLU049	Stilbene synthase	Q8LPP4	TC78210	x
CLU097	Stilbene synthase	Q9S982	TC84974	x
CLU103	Stilbene synthase	P28343	TC88894	x
1606750_at	Stilbene synthase	Q6BAL2	TC67020		x
1608009_s_at	Stilbene synthase	P51070			x
1609696_x_at	Stilbene synthase	P28343	TC67020		x
1609697_at	Stilbene synthase	Q944W7	TC60946		x
1610824_s_at	Stilbene synthase	Q93YX5	TC52746		x
1610850_at	Stilbene synthase	P28343			x
1611190_s_at	Resveratrol synthase	Q94G58	TC67020		x
1612804_at	Stilbene synthase	Q9SPW2	TC52746		x
1614621_at	Stilbene synthase	P28343	TC67020		x
1616575_at	Stilbene synthase	Q944W7	TC52746		x
1620964_s_at	Stilbene synthase	P28343			x
1622638_x_at	Stilbene synthase	Q9SPW2	TC52746		x
Secondary metabolite transport
CLU106	PDR-like ABC transporter	Q8GU88	TC76318	x
CLU119	Pleiotropic drug resistance protein 12	Q5Z9S8	TC81892	x
1613763_at	ABC transporter-like protein	Q9LYS2	TC60768		x
1618493_s_at	ABC transporter-like protein	Q9LYS2	TC64210		x
1610363_at	CjMDR1	Q94IH6	TC69843		x
1609330_at	Glutathione S-transferase	Q6YEY5	NP864091		x
1611890_at	Glutathione S-transferase GST 14	Q9FQE4	TC61062		x
1619682_x_at	Caffeic acid O-methyltransferase	Q9M560	TC52364		x
1620342_at	Caffeic acid 3-O-methyltransferase 1	Q00763	TC64352		x
Lignin biosynthesis
1611897_s_at	Caffeoyl-CoA O-methyltransferase	Q8H9B6	TC63685		x
1614643_at	Caffeoyl-CoA O-methyltransferase	Q43237	TC51729		x
1613900_at	Cinnamyl alcohol dehydrogenase	Q9ATW1	TC52904		x
1614045_at	Ferulate 5-hydroxylase	Q6IV45	TC64493		x
1614502_at	Ferulate 5-hydroxylase	Q6IV45	TC63764		x
1619065_at	Putative cinnamoyl-CoA reductase	Q8W3H0	TC53437		x
1622651_at	Polyphenol oxidase	Q68NI4	TC58764		x
1610806_at	Putative diphenol oxidase	Q6Z8L2	CD007812		x
CLU122	Chalcone-flavonone isomerase	P51117	TC78712	x
CLU048	Flavonol 3-O-glucosyltransferase 6	Q40288	TC85607	x
1621051_at	Flavonol 3-O-glucosyltransferase 2	Q40285	CN006197			x
Defence response
CLU088	Chitinase (Class II)	Q43322	TC95665	x
1613871_at	Class IV chitinase	Q9M2U5	TC57889		x
1617192_at	Class IV chitinase	Q7XB39	TC63731		x
1617430_s_at	Basic endochitinase precursor	P51613	TC51704		x
CLU001	Pathogenesis-related protein10	Q9FS42	TC72098	x
1610011_s_at	Pathogenesis-related protein10	Q9FS42			x
1618568_s_at	Pathogenesis-related protein10	Q9FS42			x
CLU021	Pathogenesis-related protein PR-4A precursor	P29062	TC91296	x
CLU036	Merlot proline-rich protein 2	Q6QGY1	TC85591	x
1609875_at	Protease inhibitor	Q6YEY6			x
1611666_s_at	Protease inhibitor	Q6YEY6	TC70006		x
1612552_at	Putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase	Q9C9W8	TC57170		x
1620309_at	Putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase	Q9C9W8	TC63451		x
1622147_at	1-Aminocyclopropane-1-carboxylate oxidase 3	Q08507	TC60326		x
1616358_at	MLO-like protein 11	Q9FI00	BQ798612			x
Cell wall metabolism
1608074_s_at	Expansin	Q84UT0	TC62965			x
1620840_at	Alpha-expansin	Q8LKJ8	TC53122			x
1615995_at	Xyloglucan endotransglycosylase XET2	Q9LLC2	CF212592			x
1620003_at	Xyloglucan endotransglycosylase 1	Q9ZRV1	TC63269			x
1608799_at	Pectin methylesterase	Q96497	TC58800			x
1619468_at	Pectin methylesterase PME1	Q94B16	TC53043			x
1619522_at	Putative beta-galactosidase BG1	Q94B17	TC56838			x
1608756_at	Polygalacturonase-like protein	Q84LI7	TC59719			x
1606763_at	Putative beta-1,3-glucanase	Q8L868	TC67051			x
1609506_at	Putative cellulase CEL2	Q94B13	NP596365			x
1610263_at	Putative beta-1,3-glucanase	Q8L868	TC67051			x
Cell duplication
1612320_a_at	Tubulin alpha chain	P33629	TC57547			x
1616815_at	Tubulin beta-8 chain	Q41785	TC55048			x
1618413_at	Tubulin alpha chain	P33629	TC63601			x
1619167_at	Tubulin beta-8 chain	Q41785	TC62643			x
1621015_at	Alpha-tubulin 1	Q8H6M1	TC65238			x
1622466_at	Tubulin beta-8 chain	Q41785	TC62809			x
1608927_at	Putative histone H2A	Q6L500	TC53574			x
1612573_at	Histone H3	A2Y533	TC56731			x
1613041_at	Histone H4	Q76H85	TC61904			x
1613076_at	Histone H4	Q76H85	TC62637			x
1620332_at	Histone H3	A2Y533	TC59489			x
1622440_at	Histone H3	A2Y533	TC64779			x
1622737_at	Histone H2B	O22582	TC64405			x
1610854_at	Proliferating cell nuclear antigen	P22177	TC54817			x
1610422_at	Patellin-6	Q9SCU1	TC61622			x
1610607_at	Gip1-like protein	Q93WR4	TC66111			x
1613373_at	Formin-like protein 1	Q8S0F0	TC55249			x
1607792_at	Putative DNA polymerase alpha catalytic subunit	O48653	TC59012			x

^aCluster or Affy ID of transcripts modulated at 2 or 6 h. (+) and (-) refer to up- and down-regulation in the treated sample with respect to the control.
^bUniprotID [73]of the first hit obtained by “Blast” analysis.
^cTC: corresponding grapevine Tentative Consensus sequence obtained by a search (BlastN) against the Grape Gene Index database [75].

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ISSN: 1471-2164

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