Complexity of the MSG gene family of Pneumocystis carinii

BMC Genomics

Table 2 HV1 types observed in groups described in Table 1.

HV1 type	Nucleotide sequence of HV1 and encoded peptide
1	CAAGCACCAGTAGCACCAGCAGCA Q A P V A P A A
2	CAAGCATCAGGAGCACCAGCAGCA Q A S G A P A A
3	CAAGCACCAGTGGCACCAGCAGCA Q A P V A P A A
4	CAAGCACCACAAGGAGCACCAGCA Q A P Q G A P A
5	CAAGCACCAGCAGTACCACCAGCA Q A P A V P P A
6	CAAGTAGTACAAGTAGTACAAGTAGCA Q V V Q V V Q V A
7	CAAGCACCAGCAGGAGTAGTACAAGTAGCACAA Q A P A G V V Q V A Q
8	CAAGCACCAGCAGGAGTAGTACAAG G AGCACAA Q A P A G V V Q V A Q
9	CAAGCACAAGTAGTACAAGGAGCACAA Q A Q V V Q G A Q
10	CAAGCACAAGGAGTACAAGGAGCACAA Q A Q G V Q G A Q
11	CAAGCATTAGGAGTACAA Q A L G V Q
12	CAAGCACAAGGAGGAGCAGCAGCAGGAGCACAA Q A Q G G A A A G A Q
13	CAAGCAAAAGTAGTACAAGGAGCACAAGTAGCACAA Q A K V V Q G A Q V A Q
14	CAAGCACCACAAGCAGCACCAGCAGCG Q A P Q A A P A A
15	CAAAGACCACAAGGAGCACCAGCA Q R P Q G A P A
16	CAAGCAGTACAAGGAGCACAA Q A V Q G A Q
17	CAACAACAAGTGGCACAAGTAGCACAA Q Q Q V A Q V A Q
18	CAAGCAGCAGGAGGAGCAGCG Q A A G G A A
19	CAAGCAGCAGCACAAAAACAA Q A A A Q K Q
20	CGGGCGCGAGGAGTACAAGGAGCACAA R A R G V Q G A Q
21	CAAGCACAAGGAGCAGGAGGAGCAGCG Q A Q G A G G A A
22	CAAGCAGTACAAGGAGCAGCG Q A V Q G A A
23	CAAGCAGTACAAGGAGCAGTG Q A V Q G A V
24	CAAGCACAAGTAGTACAAAAACAA Q A Q V V Q K Q
25	CAAGCACAAGTAGTACAAGTAGCACAA Q A Q V V Q V A Q
26	CAAGCAGCAGTAGTAGCG Q A A V V A
27	CAAGCAGTAGGAGTAGTAGCG Q A V G V V A
28	CAAGCAGCAGGAGCAGTAGCG Q A A G A V A
29	CAAAATCAAGCAGCACCAGCAGCG Q N Q A A P A A
30	CAAGCAGCAGGAGTAGTAGCG Q A A G V V A
31	CAACAACAAGTACCACAAGGAGCACAA Q Q Q V P Q G A Q

ISSN: 1471-2164