BMC Genomics

Table 2 Comparisons of the average tag count in 500 bp windows across the yeast genome among different samples

From: Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing

Experiment A		Experiment B
Experiment #	Experiment ID	Experiment #	Experiment ID	R²	p-value
10	Input_NB	14	Input_NB	0.9455	< 2.2e^-16
14	Input_NB	15	Input_ACGT	0.9556	< 2.2e^-16
14	Input_NB	16	Input_CATT	0.9473	< 2.2e^-16
14	Input_NB	17	Input_GTAT	0.9685	< 2.2e^-16
14	Input_NB	18	Input_TGCT	0.9325	< 2.2e^-16
15	Input_ACGT	16	Input_CATT	0.9422	< 2.2e^-16
17	Input_GTAT	18	Input_TGCT	0.9304	< 2.2e^-16
1	PolII_Rep1_ACGT	8	PolII_Rep2_TGCT	0.8904	< 2.2e^-16
1	PolII_Rep1_ACGT	9	PolII_Rep3_ACGT	0.9104	< 2.2e^-16
1	PolII_Rep1_ACGT	13	PolII_Rep4_NB	0.9040	< 2.2e^-16
8	PolII_Rep2_TGCT	9	PolII_Rep3_ACGT	0.9288	< 2.2e^-16
8	PolII_Rep2_TGCT	13	PolII_Rep4_NB	0.9464	< 2.2e^-16
9	PolII_Rep3_ACGT	13	PolII_Rep4_NB	0.9302	< 2.2e^-16
4	Ste12_Rep1_TGCT	7	Ste12_Rep2_GTAT	0.9655	< 2.2e^-16
4	Ste12_Rep1_TGCT	12	Ste12_Rep3_NB	0.9058	< 2.2e^-16
7	Ste12_Rep2_GTAT	12	Ste12_Rep3_NB	0.8963	< 2.2e^-16

Correlation coefficients on the average tag count in 500 bp bins between two experiments among barcoded and non-barcoded input DNA samples from the section "Similar barcode behavior with the same DNA sample" (Comparison 1–7), among barcoded and non-barcoded PolII replicates (Comparison 8–13) and among barcoded and non-barcoded Ste12 replicates (Comparison 14–16). p-values are inferior to 2.2e^-16, the lowest p-value that R can calculate. See Methods for details of the analysis.

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com