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Table 3 Percentage of monomorphic SNPs and average minor allele frequencies (MAF) by breed for 3,142 SNPs.

From: Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome

  

Data 12

# SNPs = 68

Data 12 & Data 15

# SNPs = 147

Data 20

# SNPs = 48

All*

# SNPs = 2,879

Breed

# Genotyped Animals

Monomorphic

(%)

Average

MAF

Monomorphic

(%)

Average

MAF

Monomorphic

(%)

Average

MAF

Monomorphic

(%)

Average

MAF

Duroc

82

34

0.13

28

0.16

17

0.17

29

0.13

Large White

136

13

0.23

7

0.24

8

0.28

5

0.24

Landrace

80

12

0.22

12

0.20

17

0.20

11

0.21

Pietrain

90

16

0.19

12

0.22

10

0.26

12

0.22

Berkshire

67

32

0.14

31

0.14

21

0.18

28

0.14

Hampshire

59

28

0.15

28

0.16

23

0.17

27

0.16

Wild boar

20

34

0.17

25

0.19

17

0.20

23

0.18

PW

6

13

0.27

6

0.33

6

0.37

4

0.33

  1. *SNPs identified in Data 12, Data 15, and Data 20.