Figure 4
From: High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs
Density of PARC SNPs and protein coding genes. B6 vs. D2 PARC SNPs are binned in 5000 bp intervals. The blue lines indicate how many SNPs are currently annotated in the public MPD database, and the red lines show how many PARC SNPs were discovered by custom HTS with realignment of this 3 Mb interval of chromosome 1. SNP dense and SNP sparse regions are apparent. A total of only 16 SNPs were detected between 171.6 – 172.9 Mb, whereas 11,808 SNPs were detected between 172.9 – 174.6 Mb. Below, the black blocks identify the locations of the 79 protein coding genes annotated by Ensembl in this interval.