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Table 1 Features of sHsps and Acds genes of rice

From: Rice sHsp genes: genomic organization and expression profiling under stress and development

Protein name

Gene ID

(TIGR)

Chromosome location and orientation

Intron*

FL-cDNA

sHsps

 

Hsp16.6-CVIII

Os01g04340

1: (+) 1933247–1933699

NI

AK063681

Hsp17.9B-CIX

Os01g04350

1: (+) 1940149–1940649

NI

AK119599, AK064849,

AK065690, AK062091

Hsp16.9C-CI

Os01g04360

1: (-) 1943473–1943922

NI

n/a

Hsp16.9A-CI

Os01g04370

1: (-) 1948005–1948457

NI

n/a

Hsp16.9B-CI

Os01g04380

1: (+) 1951047–1951499

NI

AK121025

Hsp18.0-CII

Os01g08860

1: (-) 4448290–4448790

NI

AK071240, DQ180746

Hsp18.8-CX

Os02g03570

2: (+) 1450233–1450766

NI

n/a

Hsp23.6-MII

Os02g10710

2: (-) 5639315–5640360

SI [97(386n)122]

AK106682

Hsp19.0-CII

Os02g12610

2: (-) 6616538–6617065

NI

CT835445

Hsp17.8-CXI

Os02g48140.1

Os02g48140.2

2: (+) 30355328–30355822

NI

CI140562

AK107963

Hsp24.0-MI

Os02g52150

2: (+) 32807782–32808549

SI [83(105n)137]

AK105464, AK074003,

AK064389

Hsp18.6-CIII

Os02g54140

2: (+) 34066403–34067009

SI [82(87n)90]

AK119261, AK063602

Hsp26.7-P

Os03g14180

3: (+) 7746457–7747179

NI

AK063618, AK120045,

AK120048, AB020973

Hsp17.9A-CI

Os03g15960

3: (+) 8856447–8856932

NI

AK104129, AK119616,

AK119664, AK073671,

AK119239, AK119675

Hsp17.4-CI

Os03g16020

3: (-) 8884576–8885040

NI

AK119243, AK119717

Hsp18.0-CI

Os03g16030

3: (+) 8885608–8886093

NI

n/a

Hsp17.7-CI

Os03g16040

3: (+) 8888694–8889173

NI

AK069547

Hsp23.2-ER

Os04g36750

4: (+) 22300635–22301282

NI

AK063700

Hsp22.3-CVI

Os05g42120

5: (+) 24674434–24675920

SI [111(875n)92]

AK110627

Hsp26.2-MI

Os06g11610

6: (-) 6151339–6152222

SI [103(137n)145]

n/a

Hsp16.0-Px

Os06g14240

6: (-) 7940169- 7940609

NI

AK105317

Hsp18.8-CV

Os07g33350.1

Os07g33350.2

7: (+) 20595735–20596341

SI [73(85n)100]

AK099296

AK063798

Hsp21.8-ER

Os11g13980

11: (-) 7752380–7753000

NI

AK107883

Acds

    

Acd18.1

Os01g40530

1: (-) 24554327–24555689

SI

n/a

Acd29.4

Os01g40550

1: (-) 24558012–24558960

SI

AK109917

Acd58.3

Os01g62300

1: (-) 37800329–37801894

NI

AK069954, AK103961

Acd52.9

Os02g48370

2: (-) 30498592–30502991

MI

AK107036

Acd19.1

Os03g61940

3: (-) 35964494–35965033

NI

n/a

Acd41.4

Os03g45330

3: (-) 26352936–26356577

SI

n/a

Acd31.8

Os03g45340

3: (-) 26360084–26361059

SI

AK062338

Acd22.6

Os03g06170

3: (-) 3074366–3075216

SI

n/a

Acd34.9

Os05g51440

5: (+) 29576192–29577284

SI

n/a

Acd50.4

Os06g41730

6: (+) 25891207–25895963

MI

AK073058, AK099075,

AK101550, AK064549

Acd21.5

Os09g17660

9: (+) 11366789–11367960

SI

n/a

Acd38.4

Os10g07200

10: (-) 3758835–3760441

SI

AK064267

Acd21.0

Os10g07210

10: (-) 3764967–3766298

SI

AK107162

Acd18.0

Os10g30162

10: (+) 16138850–16140552

SI

AK062774

Acd19.4

Os10g30180

10: (+) 16145983–16147060

SI

n/a

Acd50.7

Os12g06820

12: (-) 3316867–3318361

SI

AK110577

Acd30.2

n/a

n/a

 

AK109077

  1. n/a – not available, NI – no intron, SI – single intron, MI – multiple introns, C – cytoplasm/nuclear, M – mitochondria, ER – endoplasmic reticulum, P – chloroplast, Px – peroxisome. * The number in bracket shows the intron length in nucleotides. Numbers preceding and following the bracket represent exon1 and exon2 (in amino acids), respectively.