Figure 2

Conservation of the Hrp pathogenicity island between Pph 1448A and Pta 11528. Panel A shows an alignment of the Pph 1448A Hrp pathogenicity island (lower track) against the homologous region in Pta 11528 (upper track), prepared using GenomeMatcher, which indicates similarity values by colour with dark blue, green, yellow and red representing increasing degrees of similarity [78]. Panel B shows the MAQ [79] alignment of the Pta 11528 Illumina reads (in black) and the BLASTN [80] alignment of the Pta 11528 de novo assembly (in green) against the Hrp region of the Pph 1448A genome.