Table 2 Homologues of known hop genes in Pta 11528. Homologues were detected by searching the Pta 11528 FgenesB-predicted protein sequences against HopDB http://www.pseudomonas-syringae.org using BLASTP
Effector gene | Gene in Pta 11528 genome (location) | Hrp-box HMM score (bioinformatic evidence) | HrpL-dependent (functional screen) | Homologue in Pph 1448A |
|---|---|---|---|---|
avrE1 | C1E_5333 (1087:342585..346532) | 18.24 | Yes | PSPPH_1268 (chromosome) |
avrPto1-like | C1E_2039 (672:104030..104509) | 26.02 | Yes | None |
hopAB2 | C1E_3975 (955:85214..86053) | None | Yes | None |
hopAE1 | C1E_0512 (174:82348..85077) | 17.91 | Yes | PSPPH_4326 (chromosome) |
hopAG1 | C1E_2305 (679:71608..73584) | 19.67 | No | None |
hopAH1 | C1E_2306 (679:74209..74976) | None | No | None |
hopAH2 | C1E_3507 (891:229657..230907) | None | No | PSPPH_3036 (chromosome) |
hopAI1' (degenerate) | C1E_2307 (679:75143..75466) | 24.85 | Yes | None |
hopAJ2 | C1E_0586 (174:157540..158877) | None | No | PSPPH_4398 (chromosome) |
hopAK1 | C1E_4764 (1053:316850..318520) | 21.71 | No | PSPPH_1424 (chromosome) |
hopAN1 | C1E_1908 (661:72932..74221) | None | No | PSPPH_0456 (chromosome) |
hopAR1 | C1E_2036 (672:101352..102155) | 15.68 | Yes | None |
hopAS1 | C1E_1389 (554:110458..114543) | 18.77 | No | PSPPH_4736 (chromosome) |
hopI1 | C1E_0551 (174:125987..126916) | 21.66 | Yes | PSPPH_4366 (chromosome) |
hopM1' | C1E_5336 (1087:348226..350460) | 13.65 | Yes | PSPPH1266 |
hopO1-1 | C1E_5022 (1087:78582..79433) | 18.48 | Yes | None |
hopR1 | C1E_3889 (955:5054..6763) | 24.65 | No | PSPPH_0171 |
hopT1-1 | C1E_5021 (1087:77437..78576) | 18.48 | Yes | None |
hopV1 | C1E_2810 (733:27251..28225) | 14.09 | No | PSPPH_2351 (chromosome) |
hopW1 | C1E_3964 (955:74860..77184) | 10.73 | No | None (PSPPH is a truncated HopW1 homologue) |
hopX1 | C1E_5300 (1087:315085..316227) | 27.96 | No | PSPPH_1296 (chromosome) |
hrpK1 | C1E_5301 (1087:316323..318641) | 27.96 | No | PSPPH_1295 (chromosome) |
hrpW1 | C1E_5341 (1087:351970..352491) | 20.57 | No | PSPPH_1264 (chromosome) |
hrpZ1 | C1E_5325 (1087:337056..337478) | 19.74 | No | PSPPH_1273 (chromosome) |
| Â | C1E_5324 (1087:336767..337045) | Â | Â | Â |