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Table 3 Pta 11528 genes confirmed by the functional screen to be under the transcriptional control of HrpL

From: A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528

Gene Gene in Pta 11528 gnome Hrp-box HMM score (bioinformatic evidence) Orthologue in Pph 1448A
avrE1 C1E_5333 (1087:342585..346532) 18.24 PSPPH_1268
avrF C1E_5335 (1087:347759..348148) 13.65 PSPPH_1267
avrPto1 C1E_2039 (672:104030..104509) 26.02 None
hopAB2 C1E_3975 (955:85214..86053) None None
hopAE1 C1E_0512 (174:82348..85077) 17.91 PSPPH4326 (chromosome)
hopAI1' C1E_2307 (679:75143..75466) 24.85 None
hopAR1 C1E_2036 (672:101352..102155) 15.68 None
hopF1 C1E_5009 (1087:72050..72664) 22.14 None
hopI1 C1E_0551 (174:125987..126916) 21.66 PSPPH_4366
hopM1' (C1E_5336) 1087:348226..350460 13.65 PSPPH_1266
hopO1-1 C1E_5022 (1087:78582..79433) 18.48 None
hopT1-1 C1E_5021 (1087:77437..78576) 18.48 None
hopW1 C1E_3964 (955:74860..77184) 10.73 None
hopX1 C1E_5300 (1087:315085..316227) 27.96 PSPPH_1296
hrpH C1E_5332 (1087:341340..342365) 17.46 PSPPH_1269
hrpW1 C1E_5339 (1087:351255..351707) 20.57 PSPPH_1264
  C1E_5341 (1087:351970..352491)   
Major facilitator superfamily permease C1E_4990 1087:59133..60425 12.69 None
Putative M20 peptidase C1E_1425 (554:155221..156516) 15.05 None
schF C1E_5010 (1087:72735..73127) 22.14 None
schO1 C1E_5023 1087:79682..80245 10.50 None