Table 3 Pta 11528 genes confirmed by the functional screen to be under the transcriptional control of HrpL
Gene | Gene in Pta 11528 gnome | Hrp-box HMM score (bioinformatic evidence) | Orthologue in Pph 1448A |
|---|---|---|---|
avrE1 | C1E_5333 (1087:342585..346532) | 18.24 | PSPPH_1268 |
avrF | C1E_5335 (1087:347759..348148) | 13.65 | PSPPH_1267 |
avrPto1 | C1E_2039 (672:104030..104509) | 26.02 | None |
hopAB2 | C1E_3975 (955:85214..86053) | None | None |
hopAE1 | C1E_0512 (174:82348..85077) | 17.91 | PSPPH4326 (chromosome) |
hopAI1' | C1E_2307 (679:75143..75466) | 24.85 | None |
hopAR1 | C1E_2036 (672:101352..102155) | 15.68 | None |
hopF1 | C1E_5009 (1087:72050..72664) | 22.14 | None |
hopI1 | C1E_0551 (174:125987..126916) | 21.66 | PSPPH_4366 |
hopM1' | (C1E_5336) 1087:348226..350460 | 13.65 | PSPPH_1266 |
hopO1-1 | C1E_5022 (1087:78582..79433) | 18.48 | None |
hopT1-1 | C1E_5021 (1087:77437..78576) | 18.48 | None |
hopW1 | C1E_3964 (955:74860..77184) | 10.73 | None |
hopX1 | C1E_5300 (1087:315085..316227) | 27.96 | PSPPH_1296 |
hrpH | C1E_5332 (1087:341340..342365) | 17.46 | PSPPH_1269 |
hrpW1 | C1E_5339 (1087:351255..351707) | 20.57 | PSPPH_1264 |
| Â | C1E_5341 (1087:351970..352491) | Â | Â |
Major facilitator superfamily permease | C1E_4990 1087:59133..60425 | 12.69 | None |
Putative M20 peptidase | C1E_1425 (554:155221..156516) | 15.05 | None |
schF | C1E_5010 (1087:72735..73127) | 22.14 | None |
schO1 | C1E_5023 1087:79682..80245 | 10.50 | None |