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Table 4 Proteins encoded by the draft Pta 11528 genome that have no detectable homologues on three previously fully sequenced P. syringae genomes.

From: A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528

Genomic coordinates Locus tag Length (amino acids) Predicted function (FgenesB automated annotation)
122:73423..74418 C1E_0355 331 Glycosyltransferase involved in cell wall biogenesis
122:82519..83649 C1E_0361 376 Glycosyltransferase
195:60030..60371 C1E_0654 113 Integrase
195:63783..67199 C1E_0659 1138 ATP-binding protein
195:67192..68034 C1E_0660 280 Phosphoadenosine phosphosulfate reductase
195:68040..68927 C1E_0661 295 Serine/threonine protein kinase
256:43490..44116 C1E_0901 208 TetR family ranscriptional regulator. 49% amino acid sequence identity to G. bethesdensis GbCGDNIH1_1777 [70].
256:45146..46300 C1E_0903 384 Hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
419:2876..4135 C1E_1014 419 Biotin carboxylase
419:12230..12925 C1E_1023 231 Tabtoxin biosynthesis enzyme, TblA
419:14223..15053 C1E_1025 276 Tetrahydrodipicolinate N-succinyltransferase
554:156634..157137 C1E_1426 167 Histone acetyltransferase HPA2
554:289047..290207 C1E_1572 386 Integrase
554:300540..302342 C1E_1580 600 P-loop ATPase
661:62161..62487 C1E_1896 108 Amine oxidase, flavin-containing
672:22725..23156 C1E_1956 143 Rhs family protein
672:25358..25786 C1E_1961 142 RHS protein
672:118239..118676 C1E_2056 145 Xenobiotic response element family of transcriptional regulator. 37% amino acid sequence identity to Xylella fastidiosa PD0954 [81].
672:276912..277349 C1E_2209 145 Histone acetyltransferase HPA2
679:1273..1647 C1E_2227 124 Similar to Mucin-1 precursor (MUC-1)
679:22846..23553 C1E_2251 235 Site-specific recombinases, DNA invertase Pin homologs
679:27901..29442 C1E_2260 513 Phage integrase
679:50793..51164 C1E_2286 123 LacI family transcriptional regulator. 57% amino acid sequence identity to Rhizobium leguminosarum plasmid-encoded pRL1201 [82].
679:95310..95744 C1E_2329 144 Tfp pilus assembly protein, major pilin PilA. 42% amino acid sequence identity to P. aeruginosa UniProt:P17838 [74].
684:105988..106806 C1E_2502 272 Histone acetyltransferase HPA2
684:114136..118092 C1E_2506 1318 NTPase (NACHT family)
684:137829..138611 C1E_2527 260 Permeases of the major facilitator superfamily
684:150262..150585 C1E_2541 107 Short-chain dehydrogenase/reductase SDR
684:151896..152792 C1E_2545 298 Nucleoside-diphosphate-sugar
684:160330..161241 C1E_2553 303 Gluconolactonase
684:166181..167533 C1E_2556 450 ASPIC/UnbV domain-containing protein
684:174586..174987 C1E_2563 133 Xenobiotic response element family of transcriptional regulator. 38% amino acid sequence identity to P. aeruginosa PACL_0260 [83].
684:178452..178925 C1E_2570 157 Cro/CI family transcriptional regulator. 36% amino acid sequence identity to Pto DC3000 PSPTO_2855 [18].
684:192825..193367 C1E_2584 180 Methyl-accepting chemotaxis sensory transducer (C terminus)
684:193364..193720 C1E_2585 118 Methyl-accepting chemotaxis sensory transducer (N terminus)
684:197314..198498 C1E_2589 394 Dienelactone hydrolase
891:113887..115026 C1E_3396 379 Pectate lyase
891:121799..122809 C1E_3401 336 Type II secretory pathway, component PulK
955:27327..28100 C1E_3914 257 DNA-binding HTH domain-containing
955:37638..38900 C1E_3925 420 Outer membrane efflux protein
955:67953..68687 C1E_3957 244 Plasmid stability protein
1053:122043..123497 C1E_4568 484 Phage integrase family protein
1053:127685..128557 C1E_4572 290 Superfamily I DNA or RNA helicase
1053:130636..131022 C1E_4576 128 ATP-dependent DNA helicase, UvrD/Rep family
1053:363558..364328 C1E_4802 256 Thermostable 8-oxoguanine DNA glycosylase
1053:364986..365591 C1E_4804 201 PP-loop superfamily ATPase
1053:365588..366790 C1E_4805 400 Sugar kinase, ribokinase
1053:371237..371890 C1E_4809 217 Restriction endonuclease
1053:384339..385847 C1E_4823 502 ATPase
1053:387166..387564 C1E_4827 132 ATP-dependent DNA helicase, UvrD/Rep family
1053:403085..403480 C1E_4845 131 ATP-dependent DNA helicase, UvrD/Rep family
1053:405835..406488 C1E_4849 217 Restriction endonuclease
1087:462184..462693 C1E_5459 169 Histone acetyltransferase HPA2
1087:463060..463650 C1E_5461 196 Phage collar protein
1087:464015..464851 C1E_5462 278 Sulfotransferase
1087:466231..466944 C1E_5464 237 S-layer domain protein
1087:466941..471797 C1E_5465 1618 Pyrrolo-quinoline quinone
1102:92687..93796 C1E_5711 369 Major facilitator superfamily (MFS) permease
1102:97423..98163 C1E_5715 246 IclR-like transcriptional regulator. 62% amino acid sequence identity to Acinetobacter baumanii ACICU_01897 [84].
1160:302149..302877 C1E_6026 242 Nitroreductase
1160:303074..303616 C1E_6027 180 TetR family transcriptional regulator. 56% amino acid sequence identity to Ralstonia solanacearum RSc0820 [85].
  1. Protein-coding genes were predicted and automatically annotated using the FgenesB pipeline http://www.softberry.com. Only those proteins are shown for which a predicted function could be proposed.