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Table 2 Prediction of intrinsic stem loop terminators in the 3'-UTR of transcribed ORFs located upstream of transcribed pseudogenes.

From: Implications of high level pseudogene transcription in Mycobacterium leprae

ML#1

M. leprae Chromosomal Location

Stem Loop ΔG2

ML0090c (p)3

112884–111660

 

ML0091c

113863–113153

-21.84

ML0252

328067–331741

-20.38

ML0253 (p)

331780–332529

 

ML0254 (p)

332923–333664

 

ML0281

363432–364121

-16.11

ML0282 (p)

364131–364909

 

ML0464

561808–562095

-14.43

ML0465 (p)

562650–563430

 

ML0533

646543–647835

-20.94

ML0534 (p)

647832–648321

 

ML0641c (p)

774443–773607

-21.16

ML0642c

775945–774506

 

ML0644

777176–780127

-17.65

ML0645 (p)

782071–782519

 

ML0664

800116–800379

-15.2

ML0665 (p)

800705–801966

 

ML0679

814145–814372

-22.57

ML0680 (p)

814992–816275

 

ML0727c (p)

870011–869612

-37.21

ML0728c

870918–870028

 

ML0779

921772–924544

-21.89

ML0780 (p)

924814–925329

 

ML0928

1098053–1098337

-15.05

ML0929 (p)

1098587–1099186

 
  1. 1 Mycobacterium leprae TN, complete genome: http://genolist.pasteur.fr/Leproma/.
  2. 2 ΔG < -14 = intrinsic terminator using Genome Scanner for Terminators (GeSTer).
  3. 3 (p) = pseudogene.