Table 1 SNPs identified, substitution ratios and the fraction in repetitive context at increasing polymorphism representation constraints.
From: Mining for single nucleotide polymorphisms in pig genome sequence data
SNP representation | Total SNPs identified | Transition/transversion | Fraction SNPs in repetitive sequence |
|---|---|---|---|
1 | 98151 | 1.9 | 0.39 |
2 | 6374 | 2.8 | 0.60 |
3 | 1202 | 4.2 | 0.90 |
4 | 462 | 5.8 | 0.96 |