Table 3 Comparison of substitution frequencies of SNPs deposited in dbSNP [4] and polymorphisms identified in shotgun sequences.
From: Mining for single nucleotide polymorphisms in pig genome sequence data
| Â | Â | Â | Shotgun sequence analysis | |||
|---|---|---|---|---|---|---|
| Â | dbSNP (genomic) | SNP redundancy = 1 | SNP redundancy = 2 | |||
Transitions | 5404 | 73,04% | 64167 | 65,38% | 4676 | 73,36% |
Transversions | 1995 | 26,96% | 33984 | 34,62% | 1698 | 26,64% |
Total | 7399 | Â | 98151 | Â | 6374 | Â |